Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1389 ATGGATGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTTCAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCGGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAATACTCTTCAGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTCGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGAACACTGTTTTCTTACTTGATCCACTTGAGAAACAAATTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCTATAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTCAAGAGAATTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACACCGATTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTCTTCGGTGTTCTCTTGAGGATAATGGACTTGCAGCGAATGGTAAAGTTTTTGAACATCAGCTTTCAAAGCATAGTTCTTTTAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTTATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCAAAGACTCAACAGAAGCTCTCGCACCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCTGGATGGTCCACCAAAATCACTTGATCTGAATTATTGGAGACTTGCATTGTCTGATTCTGAGTCTGTAAAATCAAAATCTGTGGACAATGTTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATACACGGAGGAGTCAGCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGGCAGTATTGACTGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAATGCTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAATAGGGAAATGATGATAGCGGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCGAATTTACATGGACCTGCAACGGCCCTATATTTGAACCTTTCCTGCCTGGAAGATGCCAAACCTATCATTAGTTCGAGTACAGCCGTTCCTTTCCTGATCCAGCTGCTTACTTGTAATGGTGAATCCCAAACCAAGCTCGATGCGCTTCATACCCTTTATAACCTTTCAACCACGCCGTCCATCATTCCTGTTCTTCTTTCCGCTGGTATTGTCGGTGGACTTCAATCCTTTATTGCAGCTCCTAGCGACAGCATGTGGACAGAGACTTCTTTAGCTATCTTAATGAACTTAGCTTCAAGCCAGTTAGGGATAGAAGAAATAACTTCAGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCTGTATCATGTTTGTTGATTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTGATTCCGGGATTGGTTGCGATTACGGTAAATGGAACTTCAAGAGGGAAAGTAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCATTCAGCAGCGAGACGGAAATAGCGACACGGCCATGGCTGCTCCAGATTCTAAGCCACTTTGCAAATCAATGTCAAAGAAAAAGATGGGGAAAGCACTAAGCTTTTTTGCGAGGAGCAAACGATTTTCACTATACCAATGTTGA 2304 41.67 MDVPEVEEIFFAAGDAKLHGEMFKKLAAIYGQVMSIFPSLEAARPRSKTGIRALCSLHVALEKAKNTLQHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKNTVFLLDPLEKQIGDDIIALLLQERKFDDSNGYNELEHFHQAATKLGITSSKAALTERRALKRIVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDTDSQGGSTPCSPTLRCSLEDNGLAANGKVFEHQLSKHSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQKLSHLSLTPNYSVKGLIANWCEHNGVPILDGPPKSLDLNYWRLALSDSESVKSKSVDNVGSHTLKEVKVVPLEESGTIKVAEENEADDNTYTEESADFITLESCVNFMAVLTEEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMEFLTLALIEENADAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSIIPVLLSAGIVGGLQSFIAAPSDSMWTETSLAILMNLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDIIQQRDGNSDTAMAAPDSKPLCKSMSKKKMGKALSFFARSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26082089 26086066 + CmPI595203_11g013890.1 Cmu11g1389 429911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1389 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cmu11g1389 767 PANTHER U BOX DOMAIN-CONTAINING 22 714 - -
Cmu11g1389 767 Pfam U-box domain 281 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu11g1389 767 SUPERFAMILY RING/U-box 274 355 - -
Cmu11g1389 767 CDD RING-Ubox_PUB 281 333 IPR045210 -
Cmu11g1389 767 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu11g1389 767 SUPERFAMILY ARM repeat 439 697 IPR016024 -
Cmu11g1389 767 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Cmu11g1389 767 SMART arm_5 506 544 IPR000225 GO:0005515(InterPro)
Cmu11g1389 767 SMART arm_5 545 586 IPR000225 GO:0005515(InterPro)
Cmu11g1389 767 SMART arm_5 460 504 IPR000225 GO:0005515(InterPro)
Cmu11g1389 767 Gene3D - 401 723 IPR011989 -
Cmu11g1389 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1719 Cmu-Chr6:28210981 Cmu11g1389 Cmu-Chr11:26082089 1.20E-11 dispersed
Cmu08g1658 Cmu-Chr8:28211799 Cmu11g1389 Cmu-Chr11:26082089 2.80E-280 dispersed
Cmu10g2558 Cmu-Chr10:32371144 Cmu11g1389 Cmu-Chr11:26082089 5.80E-11 dispersed
Cmu11g0608 Cmu-Chr11:6653490 Cmu11g1389 Cmu-Chr11:26082089 6.40E-34 dispersed
Cmu11g1389 Cmu-Chr11:26082089 Cmu03g0778 Cmu-Chr3:1954425 1.20E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1184 Blo01g00365 Blo16g01194 . . . Bpe10g00785 . Bma15g00238 Cmo04g01920 Cmo18g00698 . Cma18g00710 . Car18g00655 Sed06g1738 Cpe09g00579 Cpe01g01608 Bhi07g01900 Tan04g0075 Cmetu10g0234 Lac13g0067 Hepe10g0096 . . . . . . . . . Cone13ag1136 Cone19ag1117 Cone8ag0740 . Lsi04g00666 . . Cme10g00643 Blo06g00829 . . . . . Bma01g00018 Bma06g00574 . . . Cma04g01823 . Car04g01836 . . . . . . . . . . Cla11g01354 Cam11g1412 Cec11g1438 Cco11g1436 Clacu11g1569 Cmu11g1389 Cre11g1810 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cmu10g2293 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cmu02g1246 . 213 857 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Cmu08g1658 . 1 780 U-box Gene Family AT1G24330 59.5 3.6e-243 838.2
Cmu11g1389 . 1 755 U-box Gene Family AT1G24330 58.3 3.5e-230 795.0
Cmu08g1658 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Cmu11g1389 . 1 756 U-box Gene Family AT1G67530 57.3 3.1e-226 781.9
Cmu01g2188 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Cmu07g0263 . 135 460 U-box Gene Family AT3G07360 55.3 3.9e-82 302.0
Cmu07g0660 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cmu01g0588 . 1073 1272 U-box Gene Family AT1G71020 55.9 3.0e-54 209.9
Cmu03g0778 . 281 450 U-box Gene Family AT1G71020 57.8 9.3e-48 188.3
Cmu05g2175 . 249 414 U-box Gene Family AT1G71020 57.4 6.0e-47 185.7
Cmu02g2020 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cmu07g0660 . 16 656 U-box Gene Family AT1G23030 56.6 6.4e-110 395.2
Cmu01g0588 . 859 1462 U-box Gene Family AT1G23030 52.4 8.4e-86 315.1
Cmu03g0778 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cmu02g2020 . 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cmu03g0778 . 24 689 U-box Gene Family AT3G46510 68.2 3.5e-170 595.5
Cmu02g2020 . 3 638 U-box Gene Family AT3G46510 66.3 5.7e-157 551.6
Cmu05g2175 . 16 623 U-box Gene Family AT3G46510 58.6 5.1e-121 432.2
Cmu02g0992 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Cmu05g2175 . 12 625 U-box Gene Family AT3G54850 68.3 8.7e-163 570.9
Cmu02g2020 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cmu03g0778 . 31 650 U-box Gene Family AT3G54850 55.9 1.9e-104 377.1
Cmu02g0992 . 92 644 U-box Gene Family AT5G42340 64.2 7.3e-128 454.9
Cmu04g0693 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cmu03g1336 . 1 713 U-box Gene Family AT1G29340 67.9 1.5e-246 849.4
Cmu05g1223 . 27 403 U-box Gene Family AT5G37490 52.1 1.5e-100 363.6
Cmu04g0557 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Cmu10g2558 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Cmu10g2558 . 1 403 U-box Gene Family AT2G35930 55.6 4.6e-120 428.3
Cmu04g0557 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Cmu05g1118 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Cmu05g1118 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Cmu01g1508 . 1 407 U-box Gene Family AT5G64660 54.2 2.5e-121 432.6
Cmu01g1508 . 1 407 U-box Gene Family AT5G09800 51.3 6.4e-106 381.3
Cmu08g1602 . 1 454 U-box Gene Family AT3G49810 63.0 3.1e-154 542.0
Cmu05g2712 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Cmu08g1602 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cmu05g2712 . 1 454 U-box Gene Family AT5G65920 61.3 2.8e-147 518.8
Cmu05g0168 . 61 932 U-box Gene Family AT2G45910 52.9 2.5e-234 808.9
Cmu01g0448 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Cmu06g1719 . 1 478 U-box Gene Family AT5G65200 50.1 3.6e-88 322.8
Cmu09g1797 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cmu06g1719 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cmu01g1377 . 29 498 U-box Gene Family AT5G40140 52.1 2.8e-56 216.9
Cmu08g0879 . 15 539 U-box Gene Family AT1G76390 64.1 5.5e-178 621.7
Cmu08g0880 . 26 311 U-box Gene Family AT1G76390 55.7 2.7e-84 310.5
Cmu08g0879 . 15 539 U-box Gene Family AT1G20780 63.7 4.0e-181 632.1
Cmu08g0880 . 35 311 U-box Gene Family AT1G20780 57.9 4.3e-90 329.7
Cmu08g1658 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Cmu11g1389 . 1 767 U-box Gene Family AT1G27910 62.3 2.6e-262 901.7
Cmu01g1704 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Cmu10g2603 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cmu05g0231 . 775 905 U-box Gene Family AT5G67530 55.7 5.7e-39 159.5
Cmu05g0425 . 1 517 U-box Gene Family AT1G04510 74.4 5.3e-222 767.3
Cmu05g0425 . 1 486 U-box Gene Family AT2G33340 73.6 4.7e-209 724.2
Cmu07g0262 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010076 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 4 0 33