Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1389 ATGGATGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTTCAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCGGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAATACTCTTCAGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTCGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGAACACTGTTTTCTTACTTGATCCACTTGAGAAACAAATTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCTATAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTCAAGAGAATTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACACCGATTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTCTTCGGTGTTCTCTTGAGGATAATGGACTTGCAGCGAATGGTAAAGTTTTTGAACATCAGCTTTCAAAGCATAGTTCTTTTAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTTATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCAAAGACTCAACAGAAGCTCTCGCACCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCTGGATGGTCCACCAAAATCACTTGATCTGAATTATTGGAGACTTGCATTGTCTGATTCTGAGTCTGTAAAATCAAAATCTGTGGACAATGTTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATACACGGAGGAGTCAGCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGGCAGTATTGACTGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAATGCTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAATAGGGAAATGATGATAGCGGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCGAATTTACATGGACCTGCAACGGCCCTATATTTGAACCTTTCCTGCCTGGAAGATGCCAAACCTATCATTAGTTCGAGTACAGCCGTTCCTTTCCTGATCCAGCTGCTTACTTGTAATGGTGAATCCCAAACCAAGCTCGATGCGCTTCATACCCTTTATAACCTTTCAACCACGCCGTCCATCATTCCTGTTCTTCTTTCCGCTGGTATTGTCGGTGGACTTCAATCCTTTATTGCAGCTCCTAGCGACAGCATGTGGACAGAGACTTCTTTAGCTATCTTAATGAACTTAGCTTCAAGCCAGTTAGGGATAGAAGAAATAACTTCAGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCTGTATCATGTTTGTTGATTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTGATTCCGGGATTGGTTGCGATTACGGTAAATGGAACTTCAAGAGGGAAAGTAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCATTCAGCAGCGAGACGGAAATAGCGACACGGCCATGGCTGCTCCAGATTCTAAGCCACTTTGCAAATCAATGTCAAAGAAAAAGATGGGGAAAGCACTAAGCTTTTTTGCGAGGAGCAAACGATTTTCACTATACCAATGTTGA 2304 41.67 MDVPEVEEIFFAAGDAKLHGEMFKKLAAIYGQVMSIFPSLEAARPRSKTGIRALCSLHVALEKAKNTLQHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKNTVFLLDPLEKQIGDDIIALLLQERKFDDSNGYNELEHFHQAATKLGITSSKAALTERRALKRIVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDTDSQGGSTPCSPTLRCSLEDNGLAANGKVFEHQLSKHSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQKLSHLSLTPNYSVKGLIANWCEHNGVPILDGPPKSLDLNYWRLALSDSESVKSKSVDNVGSHTLKEVKVVPLEESGTIKVAEENEADDNTYTEESADFITLESCVNFMAVLTEEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMEFLTLALIEENADAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSIIPVLLSAGIVGGLQSFIAAPSDSMWTETSLAILMNLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDIIQQRDGNSDTAMAAPDSKPLCKSMSKKKMGKALSFFARSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26082089 26086066 + CmPI595203_11g013890.1 Cmu11g1389 429911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1389 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cmu11g1389 767 PANTHER U BOX DOMAIN-CONTAINING 22 714 - -
Cmu11g1389 767 Pfam U-box domain 281 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu11g1389 767 SUPERFAMILY RING/U-box 274 355 - -
Cmu11g1389 767 CDD RING-Ubox_PUB 281 333 IPR045210 -
Cmu11g1389 767 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu11g1389 767 SUPERFAMILY ARM repeat 439 697 IPR016024 -
Cmu11g1389 767 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Cmu11g1389 767 SMART arm_5 506 544 IPR000225 GO:0005515(InterPro)
Cmu11g1389 767 SMART arm_5 545 586 IPR000225 GO:0005515(InterPro)
Cmu11g1389 767 SMART arm_5 460 504 IPR000225 GO:0005515(InterPro)
Cmu11g1389 767 Gene3D - 401 723 IPR011989 -
Cmu11g1389 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1719 Cmu-Chr6:28210981 Cmu11g1389 Cmu-Chr11:26082089 1.20E-11 dispersed
Cmu08g1658 Cmu-Chr8:28211799 Cmu11g1389 Cmu-Chr11:26082089 2.80E-280 dispersed
Cmu10g2558 Cmu-Chr10:32371144 Cmu11g1389 Cmu-Chr11:26082089 5.80E-11 dispersed
Cmu11g0608 Cmu-Chr11:6653490 Cmu11g1389 Cmu-Chr11:26082089 6.40E-34 dispersed
Cmu11g1389 Cmu-Chr11:26082089 Cmu03g0778 Cmu-Chr3:1954425 1.20E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1389 - - - 0.0