Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1392 ATGTTTTGTAGCTCTCCCACTCCTTCTCCCCCTACTCTCTCTTCAGTCCCCTACTCCACCGGCGACGTTCACCTCTATCGGCCATTACCGCCGCTACTAGTTCATTTCATATTTCTGCTTCGTCCAATTCGTAATGTAAGAGTGCGCCATCTCGGAGCTTTTCTTCTGATTCTGAAGGACGACAGAGACTCCGATCCATACGATATTCTTCCTAATCTCATCACTATGAAGCTGACTCCAAGGGAAGTGGAAAAACTAGGTCTGCATAATGCGGGATATTTAGCACAGAAGCGTCTTGCTCGTGGCTTGAGGCTGAATTACGCTGAAGCTGTAGCCCTTATTGCCTCACAGATTTTGGAGTTCGTTCGCGATGGCAATTGCAGCGTGGCAGAATTGATGGAATTAGGGCGAGAACTCTTAGGGAGGAGACAAGTTCTTCCAAGTGTTCCACATCTTTTGAATTATATTCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAATAACTGTTCATAAGCCCATTGAGTCAGAGGTTGGGAATCTTGAGCGAGCTTTGCAGGGTTCTTTTCTTCCAGTTCCTTCGCTAGACAAGTTCCCTTTGATGGAAGATAGTAAAGTGCCTGGTGAGATTATCTGTGATGATAAAAAGATTGCAATTAATGTTGGACGGAAAGCTGTAATACTCAGTGTAAAAAATATGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGACAAATCCTTCTTTAGTTTTTGATCGATCAAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCAGCCACACGATTTGAGCCAGGGTGTCCAAAAGATGTCACACTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAACTGCATCGCCGATGGTCCAGTTGATAAATCCAAATTGAAAGAAGTGATGGAAGCTGTGCATGCAAGAGGATTTGGACATTTGGAAGAAAAAGATGCTAGAGAAGGTGTTACTGGAGGGGAGGATGAGATATTCACCACCAGAGTTCTTCGTGAGGAGTATGCCAACCACTATGGTCCCACAACTCGCGACAAAGTTCGTCTTGGTGATACAGATTTATATGCTGAAATCGAACATGATTTCTGTGTTTATGGGGATGAATGTATGTTTGGAGGTGGAAAGGTTATCAGAGATGGAATGGGCCAGGCGTGTGGGCATCCACCGGCTTCATCTCTTGATACCGTAATAACCAATGCAGTGATTATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTATTTCACTTGGAAAAGCCGGCAATCCTGATATCATGGACAGAGTTTGTCCTAATCTGATTATTGGGGCTAATACTGAGGTTATTTCTGGAGAAGGATTGCTTGTTACTTCAGGGGCAATAGATTGCCATGTCCACTACATATGCCCTCAAATGGTACATGAAGCAATATCGAGTGGCATCACGACGCTGGTGGGAGGTGGAACCGGGCCAGCTGAAGGAAGTTGTGCTACTACTTGCACACCATCCCCAGCGCTGATGAAGATGATCCTCCAATCAACTGATAACCTCCCCCTGAACTTTGGCTTTACAGGAAAAGGGAACACCTCGAAGCCAGATGAGATACATGAAATTATAAGGGCCGGAGCTATGGGACTGAAGCTACATGAAGACTGGGGATGCACTCCTGCTGCAATTGACAGTTGTTTAGCTGTGGCTGAAAAATATGACATTCAGGTTAATATTCACACTGACACCTTGAATGAATCTGGATTTGTTGAAGATACGATTGCAGCTTTTAAAGGAAGAACTATACACACATACCACACTGAAGGAGCTGGAGGCGGTCATGCACCGGATATCATCAAAGTGTGCAGTGTGAAAAATGTGCTTCCTTCATCAACTAATCCAACACGACCATTCACAACGAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTTGATCCCAATATTGAAGAAGATGTAGCTTTTGCTGAATCAAGGATAAGGAAGGAAACAATTGCTGCAGAAGATATTTTGCATGATATGGGAGCAATTAGTATGATATCTTCTGATTCACAGGCTATGGGCCGCATAGGAGAGGTGATTAGCAGAACATGGCAAACTGCCCACAAGATGAAGTTGCAAAGGGAACCGCTTGATTCCACAAAGCCAGACGACGACAACCTTCGGATCAAGCGATATGTTTCCAAATATACCATCAATCCAGCCATAGCAAATGGGATTTCTGAATATGTTGGTTCAGTAGAGGTAGGGAAATGGGCTGATCTTGTTCTATGGAAACCGTCCTTTTTTGGGACAAAACCAGAAAAGGTGTTGAAAGGTGGTATAATTGCATGGGCAAACATGGGTGATCCAAACGCAAGCATTCCTACACCTGAACCGGTACTGATGAGGCCAATGTACGGATCCATGGGAAAGGCAGCAAGTGGCAGCTCAATTGCCTTCGTCAGTAAGGCAGCATTTAACGCGGGAGTTAAGGACATGTATGGACTAAACAAGAGAGTTGTAGCAGTGAGCAACACTAGGAAACTTACTAAACTAGACATGAAATGGAATGATGCCCTTCCAAACATCCAAGTGGATCCTGATCACTATGACGTGAAAGTAGATGGCGATGTTCTTACTTGTCTCCCAGCCACTACTCTCCCACTTTCAAGGGATTACTTTCTTTTCTAG 2742 44.06 MFCSSPTPSPPTLSSVPYSTGDVHLYRPLPPLLVHFIFLLRPIRNVRVRHLGAFLLILKDDRDSDPYDILPNLITMKLTPREVEKLGLHNAGYLAQKRLARGLRLNYAEAVALIASQILEFVRDGNCSVAELMELGRELLGRRQVLPSVPHLLNYIQVEGTFPDGTKLITVHKPIESEVGNLERALQGSFLPVPSLDKFPLMEDSKVPGEIICDDKKIAINVGRKAVILSVKNMGDRPIQVGSHYHFIETNPSLVFDRSKAYGMRLNILAGSATRFEPGCPKDVTLVAIGGNQVIRGGNCIADGPVDKSKLKEVMEAVHARGFGHLEEKDAREGVTGGEDEIFTTRVLREEYANHYGPTTRDKVRLGDTDLYAEIEHDFCVYGDECMFGGGKVIRDGMGQACGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFIISLGKAGNPDIMDRVCPNLIIGANTEVISGEGLLVTSGAIDCHVHYICPQMVHEAISSGITTLVGGGTGPAEGSCATTCTPSPALMKMILQSTDNLPLNFGFTGKGNTSKPDEIHEIIRAGAMGLKLHEDWGCTPAAIDSCLAVAEKYDIQVNIHTDTLNESGFVEDTIAAFKGRTIHTYHTEGAGGGHAPDIIKVCSVKNVLPSSTNPTRPFTTNTIDEHLDMLMVCHHLDPNIEEDVAFAESRIRKETIAAEDILHDMGAISMISSDSQAMGRIGEVISRTWQTAHKMKLQREPLDSTKPDDDNLRIKRYVSKYTINPAIANGISEYVGSVEVGKWADLVLWKPSFFGTKPEKVLKGGIIAWANMGDPNASIPTPEPVLMRPMYGSMGKAASGSSIAFVSKAAFNAGVKDMYGLNKRVVAVSNTRKLTKLDMKWNDALPNIQVDPDHYDVKVDGDVLTCLPATTLPLSRDYFLF 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26101467 26112852 + CmPI595203_11g013920.1 Cmu11g1392 429914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1392 913 ProSitePatterns Urease active site. 663 679 IPR017950 GO:0009039(InterPro)
Cmu11g1392 913 ProSiteProfiles Urease domain profile. 475 913 IPR017951 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 FunFam Urease 224 342 - -
Cmu11g1392 913 Pfam Urease beta subunit 208 304 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cmu11g1392 913 SUPERFAMILY Composite domain of metallo-dependent hydrolases 346 523 IPR011059 GO:0016810(InterPro)
Cmu11g1392 913 SUPERFAMILY Urease, beta-subunit 207 335 IPR036461 -
Cmu11g1392 913 FunFam Urease subunit alpha 79 199 - -
Cmu11g1392 913 Pfam Amidohydrolase family 472 799 IPR006680 GO:0016787(InterPro)
Cmu11g1392 913 ProSiteProfiles Rhodanese domain profile. 792 810 IPR001763 -
Cmu11g1392 913 Gene3D - 475 913 - -
Cmu11g1392 913 SUPERFAMILY Composite domain of metallo-dependent hydrolases 755 825 IPR011059 GO:0016810(InterPro)
Cmu11g1392 913 NCBIfam urease subunit gamma 76 177 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cmu11g1392 913 PANTHER UREASE 76 913 IPR050069 -
Cmu11g1392 913 NCBIfam urease subunit beta 207 307 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cmu11g1392 913 SUPERFAMILY Metallo-dependent hydrolases 475 913 IPR032466 -
Cmu11g1392 913 CDD Urease_gamma 79 175 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cmu11g1392 913 Hamap Urease subunit alpha [ureC]. 345 913 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 Gene3D Urease, subunit C, domain 1 349 826 IPR011059 GO:0016810(InterPro)
Cmu11g1392 913 Gene3D Urease, beta subunit 206 336 IPR036461 -
Cmu11g1392 913 Pfam Urease subunit beta-alpha linker domain 306 337 IPR040881 -
Cmu11g1392 913 PRINTS Urea amidohydrolase (urease) protein signature 773 786 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 PRINTS Urea amidohydrolase (urease) protein signature 641 658 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 PRINTS Urea amidohydrolase (urease) protein signature 680 696 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 PRINTS Urea amidohydrolase (urease) protein signature 747 762 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 CDD Urease_alpha 346 912 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 Gene3D - 79 199 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Cmu11g1392 913 Pfam Urease, gamma subunit 76 175 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Cmu11g1392 913 Pfam Urease alpha-subunit, N-terminal domain 347 465 IPR011612 -
Cmu11g1392 913 NCBIfam urease subunit alpha 348 913 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Cmu11g1392 913 CDD Urease_beta 206 306 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Cmu11g1392 913 SUPERFAMILY Urease, gamma-subunit 76 178 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1392 K01427 - - csv:101209590 1389.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1392 Cmu-Chr11:26101467 Cmu11g1393 Cmu-Chr11:26117749 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49