Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1394 ATGGATGATGCGACGGCTTCATCAGGGTCGTTGATCAATGGGCCTCCTTCCCGGACACCCTCTTCTCTTTCTTCCACCATTTTTACCAATTACCCTCTCATTTCTGCTCTCCTTGCCTTCGCTATTGCCCAGTCCATCAAGTTCTTCACCTCCTGGTATAAGGAAAGACGATGGGATTTTAAGAAACTAGTTGGATCTGGGGGAATGCCTTCGTCTCATTCTTCAACTGTTTCTGCTCTTGCTATAGCTATTGGGCTCCAAGAAGGCTTTGGAGCATCAGTCTTTGCTGTTGCATTGATCTTAGCATGTGTTGTTATGTATGATGCAACTGGTGTGAGATTACAAGCTGGACGCCAAGCAGAGGTTTTGAATCAAATTGTTTATGAGCTTCCTGCTGAACATCCTTTGGCTGAGAGCAGACCATTGCGAGAACTTCTTGGCCACACCCCTCCCCAGGTTATAGCTGGAGGCTTGCTTGGTATTGTCACCTCATCTCTTGGCCATTTGATGATCATAATGACAAGGGAGAAGGCTATTTTCTACAGGAATGGTCAAGAAAAATTCATTTCTGTGGCTGTCATTACCCCTTCCAGAATCCCATTTCTCAGTTCCCAAAATAAACATATAGGGTTCTCTCTACGCGTCTATCTAGGACTCCGCTCGCTTGCGCGACTCTCTTCGATTCATACCGCTCTTCATCCAATCCTACTTTACAGATTACAGGTCGAGGCTCGGATTCAATTTTTTCAATCTCCCCTAGCGGGGAGAATGGGGGGTTATCGCGACTATGATATGAAGGACCGGGATTCCAGTTTTGATGTTTCGGGAGTAACTGCGAAAGAAGGATATGAACGGGGGCGGAGCGGTAACCGTGAAAGCAATAAAAGTCGAGGTCGGGATGTTAGAGACAGAATTAGGGTCCGGCAAAAGGATATCAAGGAGAGGGAAGCGGGTAATGGTAGTCTACGATCTTCGAGTAGAAGTGATTCTGGAAGCAGTGGTGGTATTGCTTCTCACGGGTTGAAGCAAAAGGTTTTGCTTGTCAGGACAATGGATAGGGAGCCGGGCGAGCTATCCAGTGAGAGTGGATCTGATGATGCCACTGAGTCCGGATTACGATTTAAAAATAGTGAGTCGGCAAAGGTGGTGGAGAATGGTATTCATTCTCCACTAGAGAAGAAGAGGAAGTTCTCACCAATAGTTTGGGACAGAGACGATAAGGAAGATGCCATTTCCACAAGAAATAAGGTTGCCAAGGCTGCGACTGCTTCATCTGTGCCGTCACCAAAGGAGCAGAAGCAGTCTCCTAATGCAACGTCGGACACTCTTGATGCTATGCCAACGGCAGGTGGTAGAAGTAAGGATCTGGAGTACTTGCAACCTTCCTCTCTTGTTGAACCGTCTGCTGGGGGCCTTGGATCAGATGAATTCTCCGCAAGTGGTTCACCAATGATGCCATCTTCTGCTTTGCTTAGGAAACCATGGCAGAATGATCTTGAAGCAGAAAATTTTGGGGACGATGATTATGCTCCCACAAGGAACATTTCATCCTCTAGATGGGCTGCTGGAAATAACACTCCTGGTGATGAAGGTGAAATTTTAGACGAGGAAATGCCTAAAAGACGAAAGACCACACCAATTTCTGAGTCCTTGGAGGGCATCAAAGTACAAAGAAAATCATTAACTCCAGAGATTGGGGAGATAATGAGACAAGGCTCTGAAGCAGGGACAAGGTCATCTGAATCGACGGAACGTGGTGATCGGTCTCGATCATCTAGTGCAAATCATTACCTTGGTAATGATTTTGAGAAGGACGAAGGCATGGATCTTGGTGATGATTTTCGTAGAATGGATACTAGCAGTAGCAGGTTGGATACTGATTCTGAGGATGAGACAGAATCTCCCGAGGAAGCAGAGCCTAGTGGCCCTCCTCCCCAACGAAGTGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAGAGGTTGAATAAGATCGATGAAGGAACTTATGGTGTTGTGTATAGAGCCAGAGACAAGAAGTCAGGGGAAATTGTTGCGTTGAAGAAGGTAAAAATGGAAAAGGAACGAGAAGGTTTTCCCATGACTTCTTTGAGAGAAATAAACATTCTTCTATCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGTCTCGATAGCATTTTTATGGTAATGGAGTACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTTCAGTTACTGGAGGGTGTTAAATACCTTCACGATAATTGGGTGCTCCATAGGGATTTAAAAACATCAAATTTACTTATGAATAACCAGGGAGAGTTGAAGATCTGTGATTTTGGACTAGCTCGGCAATATGGGAGCCCCTTGAAAACGTATACACATATGGTTGTTACTCTTTGGTACAGGGCACCTGAACTTTTATTGGGAACAAGACAGTATTCTACAGCAATTGACATGTGGTCCTTGGGTTGTATTATGGCTGAATTATTGTCAAAGCAACCACTGTTTAATGGAAAAACTGAAGTCGATCAACTTGACAAGATATTCCGAACTCTAGGGACACCCAATGAAACAATTTGGCCTGGGTTTTCCAAGCTTCCAGGAGTAAGGGTGAACTTTGTTAAGCACCAGTACAACTTATTGCGTAAGAAATTCCCAGCGACATCATTTACCGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTTCTAACTTACGATCCTGAGAAGAGAATTACAGCTGAGGCCGCTCTTAATCATGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGAATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTACGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAACGCAGAAAGGAGTTGCAGCAAGGGGAATTGGGAACATCTGGCTTCTTGACGTCAATTCTTCTCCTCTGGTCATCGTATAGAAAATGCTTCACTGACACGGCTTGCATGGCAAGAGATGGTTGGTGGGAAGGGGAGGGCGATCTTTGCTTCTCGTTGGCGAAGAATTTGACAGTTACGTTAGTTTTTCAAAGTATCAAAGCTAGCAGGTTGAGGAGCCTACCTGCATTGCTCTGGAAGTTATTAACTTAG 3219 44.67 MDDATASSGSLINGPPSRTPSSLSSTIFTNYPLISALLAFAIAQSIKFFTSWYKERRWDFKKLVGSGGMPSSHSSTVSALAIAIGLQEGFGASVFAVALILACVVMYDATGVRLQAGRQAEVLNQIVYELPAEHPLAESRPLRELLGHTPPQVIAGGLLGIVTSSLGHLMIIMTREKAIFYRNGQEKFISVAVITPSRIPFLSSQNKHIGFSLRVYLGLRSLARLSSIHTALHPILLYRLQVEARIQFFQSPLAGRMGGYRDYDMKDRDSSFDVSGVTAKEGYERGRSGNRESNKSRGRDVRDRIRVRQKDIKEREAGNGSLRSSSRSDSGSSGGIASHGLKQKVLLVRTMDREPGELSSESGSDDATESGLRFKNSESAKVVENGIHSPLEKKRKFSPIVWDRDDKEDAISTRNKVAKAATASSVPSPKEQKQSPNATSDTLDAMPTAGGRSKDLEYLQPSSLVEPSAGGLGSDEFSASGSPMMPSSALLRKPWQNDLEAENFGDDDYAPTRNISSSRWAAGNNTPGDEGEILDEEMPKRRKTTPISESLEGIKVQRKSLTPEIGEIMRQGSEAGTRSSESTERGDRSRSSSANHYLGNDFEKDEGMDLGDDFRRMDTSSSRLDTDSEDETESPEEAEPSGPPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLMNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKEFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELQQGELGTSGFLTSILLLWSSYRKCFTDTACMARDGWWEGEGDLCFSLAKNLTVTLVFQSIKASRLRSLPALLWKLLT 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26135550 26147760 - CmPI595203_11g013940.1 Cmu11g1394 429916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 599 628 - -
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 321 337 - -
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 346 360 - -
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 387 414 - -
Cmu11g1394 1072 SMART serkin_6 661 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 510 524 - -
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 417 446 - -
Cmu11g1394 1072 FunFam Cyclin-dependent kinase G-2 744 983 - -
Cmu11g1394 1072 ProSiteProfiles Protein kinase domain profile. 661 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1394 1072 Gene3D Phosphorylase Kinase; domain 1 646 743 - -
Cmu11g1394 1072 PANTHER CELL DIVISION PROTEIN KINASE 660 952 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 284 320 - -
Cmu11g1394 1072 Pfam Protein kinase domain 661 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1394 1072 SUPERFAMILY Protein kinase-like (PK-like) 653 958 IPR011009 -
Cmu11g1394 1072 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1394 1072 CDD STKc_CDC2L1 655 952 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 361 375 - -
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 274 650 - -
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 533 548 - -
Cmu11g1394 1072 Pfam Divergent PAP2 family 28 162 IPR003832 -
Cmu11g1394 1072 MobiDBLite consensus disorder prediction 1 22 - -
Cmu11g1394 1072 Gene3D Transferase(Phosphotransferase) domain 1 744 983 - -
Cmu11g1394 1072 FunFam cyclin-dependent kinase G-2 isoform X1 646 743 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1394 K08818 - - csv:101209096 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1016 Cmu-Chr2:16476791 Cmu11g1394 Cmu-Chr11:26135550 2.20E-23 dispersed
Cmu02g1017 Cmu-Chr2:16482895 Cmu11g1394 Cmu-Chr11:26135550 1.90E-19 dispersed
Cmu06g1507 Cmu-Chr6:26335316 Cmu11g1394 Cmu-Chr11:26135550 2.80E-69 dispersed
Cmu08g1664 Cmu-Chr8:28254660 Cmu11g1394 Cmu-Chr11:26135550 4.90E-244 dispersed
Cmu11g0226 Cmu-Chr11:2740120 Cmu11g1394 Cmu-Chr11:26135550 9.00E-35 dispersed
Cmu11g0462 Cmu-Chr11:5123432 Cmu11g1394 Cmu-Chr11:26135550 1.10E-61 dispersed
Cmu11g1394 Cmu-Chr11:26135550 Cmu11g1887 Cmu-Chr11:30902079 6.60E-70 dispersed
Cmu11g1394 Cmu-Chr11:26135550 Cmu04g1243 Cmu-Chr4:26924112 4.30E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75944 PF00069 Pkinase 2.50E-75 CL0016 Cmu PK