Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1415 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCCGGGATTAGGTCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGCATAATCAAGTATGGGTTCTGCCTGGTCAAAGGGAAAGCTAATCACCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAACATCTTGAAAGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCATATGAAAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCCAATGTCGGTGATTCACGTGCAGTTCTTTCTAGAGGGGGCGAAGCTGTACAGATGACCATCGATCATGAGCCAAATACAGAACGTCGCACCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGGAGATGTGCCACGAGTAAACGGCCAGCTAGCAGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATGTTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCGGTCGATATTGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTTTGTGTGCTATCGCATCTCTGGTTTCCCCTACTTGGAAAGCTGAAGAAGAAATAGCTTACCCCTCCCCACTTAACAAATTCGATCCAATTCCGAAGCTTTTTTCTGCCAATGCTTCCGCGATCCTCTGCCAGATGCCATATGCCTCTTCACCCCACATTTCAATGTGTATGTGCCAGATCTCATCTACTTTGGGGACTCGATCACGACCCAGCCAGAGTGGTCTGACTCGTTCCAAAGCCGAGTTTATCATGTGTGTAATGGCTGCCAACTCAGTGAGGAAGCTAAGCCTCATTGGATTGAGCTATGGTGGGTTTGTTGGATATTGCTTGGCGGCGAGATATTGCGAGATGGTGGAGAGGGTGGTGATGTGTAGTGCAGGTGTTTGTATGGAAAAGAAAGACCTGAAAGAAGGTTTGTTCAGAATCTCAGACTTGGAGGAGGCAGCCAAGATTTTGGTGCCGCAAGATCCTAAGAAATTGAAAGAATTGGTGAAGTTTGCCCTCTTCAGGCCTCCTCCACTAGCATTGCTGCCCTCTTGTAGTAAGTTGTGGGATGGAGTGTTCTTGAGAAAGGACTCTATCTATAAGCACTTTAGAATTTTTTCTTTTCTACTAAATCATGTGCAAAACAACCCTGATTTGAAGCAGCCAACTTTGATAATTTGGGAGAAGGTGACAAGGCATTTTGGGGAAAGCGCTCAACTGGTAGTAATCAAGAACGCAGGGCATGCTTGTGATTTGGAAAAGCCCAAGGAGTACTATCATCACTTGAAGTCCTTCCTCGGCGTCCAACGGCGAAACCATAAATGA 1638 45.24 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDVNVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVLCAIASLVSPTWKAEEEIAYPSPLNKFDPIPKLFSANASAILCQMPYASSPHISMCMCQISSTLGTRSRPSQSGLTRSKAEFIMCVMAANSVRKLSLIGLSYGGFVGYCLAARYCEMVERVVMCSAGVCMEKKDLKEGLFRISDLEEAAKILVPQDPKKLKELVKFALFRPPPLALLPSCSKLWDGVFLRKDSIYKHFRIFSFLLNHVQNNPDLKQPTLIIWEKVTRHFGESAQLVVIKNAGHACDLEKPKEYYHHLKSFLGVQRRNHK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26375805 26383812 + CmPI595203_11g014150.1 Cmu11g1415 429937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1415 545 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cmu11g1415 545 SUPERFAMILY PP2C-like 25 277 IPR036457 -
Cmu11g1415 545 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cmu11g1415 545 PANTHER PROTEIN PHOSPHATASE 30 276 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu11g1415 545 SMART PP2C_SIG_2 42 278 IPR001932 -
Cmu11g1415 545 SUPERFAMILY alpha/beta-Hydrolases 356 537 IPR029058 -
Cmu11g1415 545 CDD PP2Cc 30 278 IPR001932 -
Cmu11g1415 545 SMART PP2C_4 23 276 IPR001932 -
Cmu11g1415 545 FunFam Probable protein phosphatase 2C 39 21 279 - -
Cmu11g1415 545 Gene3D alpha/beta hydrolase 340 540 IPR029058 -
Cmu11g1415 545 Gene3D - 26 281 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0296 Cmu-Chr7:2955514 Cmu11g1415 Cmu-Chr11:26375805 2.10E-87 dispersed
Cmu09g0464 Cmu-Chr9:4310254 Cmu11g1415 Cmu-Chr11:26375805 4.80E-34 dispersed
Cmu11g0873 Cmu-Chr11:11452378 Cmu11g1415 Cmu-Chr11:26375805 6.80E-30 dispersed
Cmu11g1415 Cmu-Chr11:26375805 Cmu11g1788 Cmu-Chr11:29998819 1.10E-86 dispersed
Cmu05g1641 Cmu-Chr5:26357131 Cmu11g1415 Cmu-Chr11:26375805 1.50E-52 transposed
Cmu06g1511 Cmu-Chr6:26379242 Cmu11g1415 Cmu-Chr11:26375805 1.50E-24 transposed
Cmu10g1724 Cmu-Chr10:20087344 Cmu11g1415 Cmu-Chr11:26375805 9.10E-120 transposed
Cmu01g1813 Cmu-Chr1:31800485 Cmu11g1415 Cmu-Chr11:26375805 3.50E-35 wgd
Cmu11g1415 Cmu-Chr11:26375805 Cmu08g1049 Cmu-Chr8:22802752 7.00E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1415 K17506 - csv:101213414 546.969