Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1433 ATGTCTTCTCTGGCAATAGCCAATCAAGAAGCCAAAACCGAACAAGCAAGGCCAAAGCCAAATGCCGACTTAAGAAGGACGCTTGCGGGAGAGTTTCGAGTTTCCCGACAGGTTGATGTACAAGCGACAGTGATAATGAAGAGATTTGCCCACTCAGATTCCTTGGATTCATTCATCACCATCTTCTCCCCTAATGATCAACCGAGCTCCAAAACCATAGGCGGCTACAGCAAGGAGTTTCAAGCAATGTTAGACAGTTTGGAGGAAGAAGACAACAGCGAAGACGGCGGCAACGGTGGCGGGTCAGCACCGGAGAGAAAACGGCGGCTGAAGGTGGATCAAGTGAAGGTCTTGGAGAGGCATTTTGAAGTGGAAAACAAGTTAGAACCAGAGAGAAAAATGAAGATTGCAGCTGAATTAGAGCTTGAACCAAAGCAAGTTACAATTTGGTTCCAAAATCGCAGAGCCCGTTGGAAAACAAAGCAATTAGAGAGAGATTATGGAGTTCTTAAAGTCAATTACGATGCTCTTAAACTGGACTATGATGTTCTTGAGAAAGAGAATGCTTCTCTTGCTTCAAAGGTCAAAGAGTTGAGGGAAAAAGTAAGGAGAGAAGGAACAGAGATGAAAATTCAAAGAGAAGTGAAAAATGGGTCAGTGGAGAGAGATTCAAACAGAGATGGGAATTCATATATTTCCATGTTGAATTGCTTTGAATTTTCTGGGAAAGTTTATGAGAATCAAACCCAGTTTACAAGGGCAATGAATGATGATGATGATGATCAAAGTTTGGTTAATATAGAAGAGCCTTGCAATTTCTGTTCTGTTGATCAAGCTCCCTCTCTCCACTGTGGAAATCAACACATAAAAAGGAATGAAAATAGAAAAAAAGAAAAACTTGTGGACCCCATTCTTGGTTTTTGTTTGCCAAAAATCGATTTGTAA 945 41.27 MSSLAIANQEAKTEQARPKPNADLRRTLAGEFRVSRQVDVQATVIMKRFAHSDSLDSFITIFSPNDQPSSKTIGGYSKEFQAMLDSLEEEDNSEDGGNGGGSAPERKRRLKVDQVKVLERHFEVENKLEPERKMKIAAELELEPKQVTIWFQNRRARWKTKQLERDYGVLKVNYDALKLDYDVLEKENASLASKVKELREKVRREGTEMKIQREVKNGSVERDSNRDGNSYISMLNCFEFSGKVYENQTQFTRAMNDDDDDQSLVNIEEPCNFCSVDQAPSLHCGNQHIKRNENRKKEKLVDPILGFCLPKIDL 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26553002 26556799 - CmPI595203_11g014330.1 Cmu11g1433 429955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1433 314 Coils Coil 174 201 - -
Cmu11g1433 314 CDD homeodomain 106 162 IPR001356 GO:0003677(InterPro)
Cmu11g1433 314 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677(InterPro)
Cmu11g1433 314 SUPERFAMILY Homeodomain-like 95 163 IPR009057 -
Cmu11g1433 314 MobiDBLite consensus disorder prediction 88 109 - -
Cmu11g1433 314 Pfam Homeobox associated leucine zipper 161 202 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1433 314 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu11g1433 314 Gene3D - 97 166 - -
Cmu11g1433 314 Pfam Homeodomain 107 159 IPR001356 GO:0003677(InterPro)
Cmu11g1433 314 SMART HOX_1 104 165 IPR001356 GO:0003677(InterPro)
Cmu11g1433 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 80 260 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cmu11g1433 314 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1433 K09338 - - csv:101209840 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1652 Cmu-Chr10:18194454 Cmu11g1433 Cmu-Chr11:26553002 1.40E-31 dispersed
Cmu10g2192 Cmu-Chr10:27992538 Cmu11g1433 Cmu-Chr11:26553002 3.10E-24 dispersed
Cmu10g2673 Cmu-Chr10:33529430 Cmu11g1433 Cmu-Chr11:26553002 3.90E-15 dispersed
Cmu11g0727 Cmu-Chr11:8034907 Cmu11g1433 Cmu-Chr11:26553002 1.00E-12 dispersed
Cmu01g1803 Cmu-Chr1:31696736 Cmu11g1433 Cmu-Chr11:26553002 1.10E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014196 0 2 0 0 0 0 1 0 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7170 PF00046 Homeodomain 1.30E-15 CL0123 Cmu TF