Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1441 ATGATTCCAATTATGGCAATAAGGAAGAAGAATCACGTTCTCACTTGCCAATTATTGTTACTTTTGTTGCCACTGCCGCCGCCGCCGGCCGCCGCGCAGGAAACCGGAGCCGGAACGATACCGATATCGTCGGAACCGGAGGTTAGTAAAAACATGGCGATTGCATTCGTTGCGCTGATTTCTGGCTTCTTCATCCTTGGCATCATCTCTATTTACACGCGCCGCTGCAGAGAGAGGAGGTTCCGAGGTGCAGGAATCGGAATAGGTAGCGGAGGTGGTGGCGGCGGCGTGCCGTGGAGGCCGTCGCGTGGACTCGATCCGGCGTTCATAGCGACATTTCCAACTTTTGTGTACTCGACGGTGAAAGGGCTGAAAATCGGGAAAAGCTCACTGGAATGTGCTGTTTGCTTGAATGAATTCGAAAATAGCGATAGCCTGCGTTTAATTCCGAATTGTAGCCATGTTTTTCACTCTGCTTGTGTTGATGCTTGGTTAGTTTCACACTCGACTTGCCCCGTTTGCAGAGCCAATCTTTGTCCTAAACCTGGTGAAGTAACATTGTCGATCGTTAATTTCGATCCGTCCACCGGCTCAGAAAGAATCGGAGTTGAACGGTCGCCGACGCCATCACCATCACCGCCAAACCACGTGTCGATTCCGATGGGGGATGACTGCCATGCCGGAGAAGGAGCGGCAACGGAGATAAATGCGATGAATCCAAGTCCGGTGGCGAACCGGAGTACACCGACGCGGTCGAGGTCACTGGGATGGCGGTTGAGCGGAATATTCCAGCGGTCTAACTCGACCGGGCATGAGCGGTTTACTCTAAGGTTACCGGAGGCAGTTCGGAGTCAGTTGATGAACTCGACGCTGAACCGGACCAGAAGCTGGGCGGAGTTGCCGAGAGTGCAGAGTTTGCGACGGGGATACCGGGGTGGAATCGGAGAAAATGGCGGGTGGAGGAATTTCCTACGGCGGACGTTTTCGGTTCCGGCGTCTGTAGTCGGAAGGGCTGCCGGAACCGATCCGGTGAATGAGGACTTCGGCGAACGATCGTTTGCGCGGCTGAGGCCAAGTGGAAATGGTCCGAGTACAACGGCGGATTAG 1107 54.29 MIPIMAIRKKNHVLTCQLLLLLLPLPPPPAAAQETGAGTIPISSEPEVSKNMAIAFVALISGFFILGIISIYTRRCRERRFRGAGIGIGSGGGGGGVPWRPSRGLDPAFIATFPTFVYSTVKGLKIGKSSLECAVCLNEFENSDSLRLIPNCSHVFHSACVDAWLVSHSTCPVCRANLCPKPGEVTLSIVNFDPSTGSERIGVERSPTPSPSPPNHVSIPMGDDCHAGEGAATEINAMNPSPVANRSTPTRSRSLGWRLSGIFQRSNSTGHERFTLRLPEAVRSQLMNSTLNRTRSWAELPRVQSLRRGYRGGIGENGGWRNFLRRTFSVPASVVGRAAGTDPVNEDFGERSFARLRPSGNGPSTTAD 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26638108 26639214 + CmPI595203_11g014410.1 Cmu11g1441 429963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1441 368 Pfam Ring finger domain 132 175 IPR001841 -
Cmu11g1441 368 SUPERFAMILY RING/U-box 128 183 - -
Cmu11g1441 368 SMART ring_2 133 174 IPR001841 -
Cmu11g1441 368 CDD RING-H2_EL5-like 132 175 - -
Cmu11g1441 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 180 IPR013083 -
Cmu11g1441 368 FunFam E3 ubiquitin-protein ligase ATL6 98 181 - -
Cmu11g1441 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 223 - -
Cmu11g1441 368 MobiDBLite consensus disorder prediction 338 368 - -
Cmu11g1441 368 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1441 K10664 - - csv:101206673 546.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1074 Cmu-Chr8:23031611 Cmu11g1441 Cmu-Chr11:26638108 1.50E-74 dispersed
Cmu09g1912 Cmu-Chr9:35174771 Cmu11g1441 Cmu-Chr11:26638108 3.50E-13 dispersed
Cmu10g0894 Cmu-Chr10:990154 Cmu11g1441 Cmu-Chr11:26638108 1.40E-12 dispersed
Cmu11g1271 Cmu-Chr11:24771027 Cmu11g1441 Cmu-Chr11:26638108 3.30E-20 dispersed
Cmu02g1581 Cmu-Chr2:29627793 Cmu11g1441 Cmu-Chr11:26638108 3.60E-47 transposed
Cmu09g1129 Cmu-Chr9:11818595 Cmu11g1441 Cmu-Chr11:26638108 7.30E-23 transposed
Cmu10g1497 Cmu-Chr10:9995133 Cmu11g1441 Cmu-Chr11:26638108 1.00E-10 transposed
Cmu01g1798 Cmu-Chr1:31653751 Cmu11g1441 Cmu-Chr11:26638108 5.00E-24 wgd
Cmu11g1441 Cmu-Chr11:26638108 Cmu08g1072 Cmu-Chr8:22993488 1.00E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59