Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1453 ATGAATCAAAATTGCTTCCGTTCAGATCGCTGGCTGATGGTTATTACACAACAACCAAGTTCAAAGCCAATGGCTTGTGGTAATGTCTACGACTCTGGCCGGTTTTCGATCCGTCATTCTTTATCTAAAGCATCTAGATTCTTTGACTTGATTGAGAAGCATCTTCAAAACACTTCAACTCTACCAAAATCCATCACTGGAGCTCTTACAGATTGTCAGTATCTTGCTCAACTGAATATCAATTTCTTGTCGAATTCGTTTCGGGCCGTTAATGGCACGGATAAAAAGCTAACTTACTCAAAAGCTGATTATATCCAAAGTCTTCTTAGTGCCATTTTAACCAACATTGATACCTGTCTTGATGGTCTAAACACTGTAGCCTCAGGTTCAAGTTTGGAGAAAGACTTGTTAGCCCCACTTATTGATTGTACCAAATCATACAGTCTTTCACTTGATCTTTTTACAAAGGGTTGGGTTCCTAGGAGGAATAGAAACAGAACACTTGGGAAAAAACACCAGCAGTTTAGGAAAGGACCAGTACCGTTGAGAATAATGTCGAGACGCGACCGGGAAGTTTACAACTCGGTGGTGAATCGGAGAAAGCTTTCTTCTTCATCAGATGACGGAGTTTTGGTTAGTGGCATCGTAGTTGTGAGTCAAGATGGCAAAGGAGACTTCCTTAACATCACAGAAGCTATTAATGCAGCTCCAAATAAAGCTCTTGCTGCCAATGGCTACTTCTTGATTTACATTATGGCTGGTGTTTACCAAGAGTATGTGTCTATCCCTTCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATCATCACAGGCAACCGGAGCGTCGCGGACGGATGGACGACGTTCAACAGTGCAACTTTTGCTGTAGCAGCAGAAGGATTCATGGCAGTAAACATAACCTTCCAAAACACAGCTGGACCCATCAAGGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGATATGTGTGTTTTTTACAGCTGCAGTTTTGAAGGCTACCAAGACACCTTATACACTCATTCCCTCAGACAATTCTTTAGAGAATGTGATATTTATGGCACAGTAGACTTCATATTTGGAAATGCCGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTTCCCCACCCCGGTCAGACCAACATGATCACGGCTCAAGGCCGATCGGATCTGAACCAAAACACCGGGACTTCGATCCACAACTGCACGATCCGCTCCGCAAGCGATTTGGCTGCAAGTAGTAGCTATATGAACAAGACATATTTGGGAAGGCCATGGAAGAAATATTCAAGAACAATGTATATGCAAACATTTATAGATGAGTTTATAAATCCTGGTGGTTGGGATCCATGGTCAGGGGAATATTTGAGTACATTGTATTATGGAGAGTATAATAATAGAGGAGGTGGATCAAATACAAAGAACAGAGTTAATTGGTCAGGTTTTCATGTGATTAATAATGCAACAGATGCTGCTTATTTTACAGTTTCAATTTTCTTGGTTGGGGATGTGTGGTTGCCTCCAACATGTGTGCCTTACACCGGAGGCTTGATATAA 1593 41.75 MNQNCFRSDRWLMVITQQPSSKPMACGNVYDSGRFSIRHSLSKASRFFDLIEKHLQNTSTLPKSITGALTDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRRNRNRTLGKKHQQFRKGPVPLRIMSRRDREVYNSVVNRRKLSSSSDDGVLVSGIVVVSQDGKGDFLNITEAINAAPNKALAANGYFLIYIMAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGPIKGQAVALRSGADMCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPHPGQTNMITAQGRSDLNQNTGTSIHNCTIRSASDLAASSSYMNKTYLGRPWKKYSRTMYMQTFIDEFINPGGWDPWSGEYLSTLYYGEYNNRGGGSNTKNRVNWSGFHVINNATDAAYFTVSIFLVGDVWLPPTCVPYTGGLI 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26756742 26761432 - CmPI595203_11g014530.1 Cmu11g1453 429975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1453 530 CDD PMEI-like_3 5 158 - -
Cmu11g1453 530 Pfam Plant invertase/pectin methylesterase inhibitor 34 152 IPR006501 GO:0004857(InterPro)
Cmu11g1453 530 Gene3D - 212 529 IPR012334 -
Cmu11g1453 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 156 IPR035513 -
Cmu11g1453 530 Pfam Pectinesterase 216 515 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu11g1453 530 ProSitePatterns Pectinesterase signature 2. 362 371 IPR033131 -
Cmu11g1453 530 PANTHER PECTINESTERASE 33 520 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu11g1453 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 12 156 IPR035513 -
Cmu11g1453 530 SMART PMEI_2 14 153 IPR006501 GO:0004857(InterPro)
Cmu11g1453 530 SUPERFAMILY Pectin lyase-like 212 528 IPR011050 -
Cmu11g1453 530 FunFam Pectinesterase 211 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0113 Cmu-Chr2:1263820 Cmu11g1453 Cmu-Chr11:26756742 6.50E-146 dispersed
Cmu09g1975 Cmu-Chr9:35824746 Cmu11g1453 Cmu-Chr11:26756742 7.80E-78 dispersed
Cmu10g1411 Cmu-Chr10:7896311 Cmu11g1453 Cmu-Chr11:26756742 2.40E-91 dispersed
Cmu11g0015 Cmu-Chr11:603102 Cmu11g1453 Cmu-Chr11:26756742 1.60E-81 dispersed
Cmu11g1453 Cmu-Chr11:26756742 Cmu09g0533 Cmu-Chr9:4885348 6.20E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1453 K01051 - csv:101205879 896.73