Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1471 ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTTCCTTTTACTTTTACGCGCCCTTCATTTCTGCAACAACAACAATACCAAAGCCTCCTCGCCAGTTTTCTTCTTCATGGCCGGCGAACGCTGCCTCGCCGGCCGCCGCACCTCCTCCGCTGCAACTACTGATTCACGACCAACATGTTGTGATGGACAATGGCATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAGTACAAAGGGATTGAAAACTTGCTCGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGACCTCATTCCCTTGAACATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCAGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGGCGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGCTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGAGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCTTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCTCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACAACCTGGAAAATTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTTCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCAGGCAGTGAGCTTGTGAGCATAAGAGGGTCACTCCTCTCCTCTCAGTTCCAACCAGTAGAGATTGACACCTTCCTTGGCTTGGCTTTGTTGAAAATGGCAAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAACGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATAACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGCCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTCTTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTCCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAG 3077 44.46 MKNSKFFPSILFCLFSSFSFYFYAPFISATTTIPKPPRQFSSSWPANAASPAAAPPPLQLLIHDQHVVMDNGIIGVNLSNPMGMVIGIQYKGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPGDRKPPRGEALAYPEAVLLLDPIEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFLASEDFLKSDQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVLNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALSPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVSIRGSLLSSQFQPVEIDTFLGLALLKMANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLD 1025
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 27000616 27014251 - CmPI595203_11g014710.1 Cmu11g1471 429993
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1471 1025 SUPERFAMILY Galactose mutarotase-like 67 346 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cmu11g1471 1025 CDD RGL4_C 497 668 - -
Cmu11g1471 1025 CDD RGL4_N 696 983 - -
Cmu11g1471 1025 Gene3D - 383 483 - -
Cmu11g1471 1025 Pfam Polysaccharide lyase family 4, domain III 495 657 IPR029411 -
Cmu11g1471 1025 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Cmu11g1471 1025 Pfam Rhamnogalacturonate lyase family 48 255 IPR010325 -
Cmu11g1471 1025 Pfam Rhamnogalacturonate lyase family 682 882 IPR010325 -
Cmu11g1471 1025 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 682 1025 IPR051850 -
Cmu11g1471 1025 FunFam Rhamnogalacturonate lyase B 383 482 - -
Cmu11g1471 1025 SUPERFAMILY Galactose mutarotase-like 694 973 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cmu11g1471 1025 SUPERFAMILY Galactose-binding domain-like 492 656 IPR008979 -
Cmu11g1471 1025 Gene3D - 493 680 - -
Cmu11g1471 1025 SUPERFAMILY Starch-binding domain-like 383 483 IPR013784 GO:0030246(InterPro)
Cmu11g1471 1025 CDD RGL4_M 386 485 IPR029413 -
Cmu11g1471 1025 CDD RGL4_N 63 346 - -
Cmu11g1471 1025 Gene3D - 689 954 IPR014718 GO:0030246(InterPro)
Cmu11g1471 1025 Gene3D - 62 338 IPR014718 GO:0030246(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1471 Cmu-Chr11:27000616 Cmu11g1472 Cmu-Chr11:27020344 1.00E-245 tandem
Cmu01g1769 Cmu-Chr1:31414268 Cmu11g1471 Cmu-Chr11:27000616 1.80E-198 wgd
Cmu11g1471 Cmu-Chr11:27000616 Cmu08g1092 Cmu-Chr8:23227398 3.40E-249 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1471 K18195 - csv:101203789 1108.59