Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1484 ATGGAGTTGAATGAAAACTATTTGTTAGAGGAAGTTTTAGGTGTGAGAAGAGAAATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGGTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACAATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACCGGCGATTCAATGTTGGAGACTCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAATATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACGGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGGCAGCCGTCCAAGAATCTCATGGCTGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACCGCGATTCTGGCAGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATTAAGAAGTTGGAAAGGGAAATTGAGGTGAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGGAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG 996 41.37 MELNENYLLEEVLGVRREMNWELAMSMEMNELICSANGWNFDCSDSSAMDQHNLNYLLGGQGQYCLPTAAGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKKLEREIEVNNNNNPNKLGIMRDVKPNNEYLVRNSPKFNVERRGDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFNDFAIQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27146309 27149078 + CmPI595203_11g014840.1 Cmu11g1484 430006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1484 331 Coils Coil 196 223 - -
Cmu11g1484 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Cmu11g1484 331 Pfam Plant bHLH transcription factor, ACT-like domain 250 320 IPR054502 -
Cmu11g1484 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 326 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu11g1484 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 222 IPR036638 GO:0046983(InterPro)
Cmu11g1484 331 CDD ACT_UUR-ACR-like 257 320 - -
Cmu11g1484 331 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
Cmu11g1484 331 Gene3D - 152 224 IPR036638 GO:0046983(InterPro)
Cmu11g1484 331 Coils Coil 95 115 - -
Cmu11g1484 331 Pfam Helix-loop-helix DNA-binding domain 164 206 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1341 Cmu-Chr5:16333750 Cmu11g1484 Cmu-Chr11:27146309 2.70E-32 dispersed
Cmu11g1182 Cmu-Chr11:22833513 Cmu11g1484 Cmu-Chr11:27146309 1.90E-12 dispersed
Cmu03g1002 Cmu-Chr3:4648530 Cmu11g1484 Cmu-Chr11:27146309 6.60E-33 transposed
Cmu01g1763 Cmu-Chr1:31347739 Cmu11g1484 Cmu-Chr11:27146309 1.50E-68 wgd
Cmu11g1484 Cmu-Chr11:27146309 Cmu08g1128 Cmu-Chr8:23637418 5.90E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7173 PF00010 HLH 5.70E-10 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1484 - - - 0.0