Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1491 ATGCCTCTTCCTTTCTACTTCTTCTTTCTTCTATCTTTCCTTTCTCTTGCCATTGGAACTGACCAGTTTCAATTTTTCTCTTTCATGCAAAAGGGTGTCATCGGGAATTCTCTCCCCTCCGATTGGACTGGAAATTCCTTCTGTAATTTCACCGGAGTTAGCTGTAACCAAAAGGGGTTAGTGGTCGGAATTGATCTCTCTGGCAGGGCGGTTTCCGGGAGGTTTCCGGCAGATGTTTGTTCTTATTTGCCGGAGTTGAGAGTGCTGCGGCTTGGACGGAGTGGCTTTCGTGGAACCTTTCCACGTGGGATAACCAATTGCTCTGTTTTGGAAGAATTGGATATGAGTTTTCTGTCACTGACGGGGACGTTACCGGATTTCTCGCCGTTGAAAACCTTGAGGATTCTCGACATGTCGTACAATAATTTCACCGGTGAATTCCCCTTGTCGGTTTTCAGTTTAACCAATCTCGAGAAGTTGAATTTCAACGAGGACAACAATTTCAATACGTGGCAGTTGCCGGAGAGTGTGTCCGGCTTGACGAAGTTGAAATCCATGGTGTTAACGACTTGTATGCTGGAGGGTCGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACCTTGAATTAAGCGGCAATTTCCTCACCGGAAAAATCCCAAGAGAAATCGGGAATTTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAGTCGGAGAAATTCCAGAGGAACTTGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCAGTCAACAAGTTGACTGGGAAACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTTGAAGTTCTTCAATTTTACAACAACTCATTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCTCCCATGGTGGTTCTCGACTTGTCGGAAAATTATTTCTCCGGTCCTTTACCGACAGATGTCTGTGGAGAAGGTAAATTAATGTATTTCCTTGTGTTGGAAAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTAAATGCCAATCCCTTTTACGGTTTCGAGTCAGTTCGAATATTTTGGAAGGTCCGGTGCCGGTGGGACTTTTGAGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTGAGTGGCGAAATTCCCAATTCTTTTGTTAAAGCGAGGAATCTTTCGGAATTGTTTATGCAGAGTAATAGAATTTCCGGCGTGTTGCCGCCGGAAATTTCTAAAGCTACCAATTTAGTTAAGATTGATCTTAGCAACAATCTCTTGTCTGGTCCAATTCCTTCCGAAATTGGGAATCTCAGAAAGCTTAATTTGTTGCTTTTGCAAGGAAATCACTTGAATTCTTCAATACCCACCTCGCTTTCTGAGCTTAAATCTCTTAATGTTCTTGATTTATCCGATAATCGATTAACGGGTAACATCCCAGAAAGTCTCTGTGAATTGCTACCGAATTCAATCAATTTCTCAAACAATCAACTCTCTGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGAAACCCTGGACTTTGCGTTTCGGTTTATTTAGATTCATCAGATCAGAAATTCCCAATTTGTTCTCAAAATTACAACAAAAATCGATTGGATTCCATCTGGGCAATCGGAATATCGGCGTTCATAATCTTCATCGGAGCTGCTCTGTATTTAAGACGACGATTCAGCAGAGAAAAATCGATAATGGAACAAGACGAAACACTATCTTCATCGTTCTTCTCATACGATGTGAAAAGTTTCCATCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCGATGGTGGATAAGAACATCGTCGGCCATGGCGGCTCCGGTACGGTGTACAAAATAGAGTTAAGCAGTGGGGAAATCGTAGCCGTTAAAAGGCTGTGGAGTCGAAAGGGGAAAGATACGACGTCGGATCAAGAACAGTTGTATTTGGACAAAGAACTGAAAACAGAGGTGGAAACATTAGGGAGTATAAGGCATAAAAACATAGTGAAATTGTATTGCTATTTCTCAAGCTTGGATTGCAGTTTATTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTGCATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTGGGTATAGCCCAAGGCTTGGCTTACCTTCATCATGATTTGTTGCCTTCTATAATCCATAGAGACATTAAAACCACTAATATTCTCTTAGATGTCAATTATCATCCCAAAGTTGCCGATTTTGGTATTGCTAAGGTTTTGCAAGCTAGAACGGGCAAGGATTCTACCACCACCGTCATCGCCGGTACTTACGGCTATCTCGCTCCAGAGTATGCATATTCGTCAAAAGCTACAACAAAGTGCGACGTGTACAGCTTTGGAATCGTGTTGATGGAGCTAATAACAGGAAAGAAACCGGTGGAGGCAGAATTTGGGGAGAACAAGAACATCATATATTGGGTTTCAAACAAAGTAGACACAAAGGAAGGAGCAATGGAAGTATTAGACAAAAGAGTTTCAGGGTCATTCAAAGATGAGATGATTGAAGTTCTAAGGATTGCAATTCGTTGTACGTACAAGAATCCAGCCCTTAGACCCACCATGAAGGAAGTGGTTCAACTATTGATTGAAGCTGACCCTTGCAAATTCGATTCTCACAACAAATGCCCCAAACACACCACCACCAAAATCAACAACCCATTTGACCTATGA 2844 41.81 MPLPFYFFFLLSFLSLAIGTDQFQFFSFMQKGVIGNSLPSDWTGNSFCNFTGVSCNQKGLVVGIDLSGRAVSGRFPADVCSYLPELRVLRLGRSGFRGTFPRGITNCSVLEELDMSFLSLTGTLPDFSPLKTLRILDMSYNNFTGEFPLSVFSLTNLEKLNFNEDNNFNTWQLPESVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPREIGNLKNLRQLELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQFYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGKCQSLLRFRVSSNILEGPVPVGLLSLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNRISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSELKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDQKFPICSQNYNKNRLDSIWAIGISAFIIFIGAALYLRRRFSREKSIMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRKGKDTTSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKCPKHTTTKINNPFDL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27250712 27254054 + CmPI595203_11g014910.1 Cmu11g1491 430013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1491 947 FunFam Leucine-rich repeat receptor-like protein kinase 170 272 - -
Cmu11g1491 947 SMART serkin_6 640 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1491 947 Pfam Protein kinase domain 643 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1491 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524(InterPro)
Cmu11g1491 947 SMART LRR_typ_2 276 300 IPR003591 -
Cmu11g1491 947 SMART LRR_typ_2 130 154 IPR003591 -
Cmu11g1491 947 SMART LRR_typ_2 228 252 IPR003591 -
Cmu11g1491 947 SMART LRR_typ_2 492 516 IPR003591 -
Cmu11g1491 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 SUPERFAMILY L domain-like 245 562 - -
Cmu11g1491 947 FunFam receptor protein-tyrosine kinase CEPR1 623 725 - -
Cmu11g1491 947 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Pfam Leucine Rich Repeat 133 153 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Pfam Leucine Rich Repeat 422 443 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Pfam Leucine Rich Repeat 494 516 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Cmu11g1491 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Cmu11g1491 947 Gene3D Ribonuclease Inhibitor 298 561 IPR032675 -
Cmu11g1491 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Cmu11g1491 947 SUPERFAMILY RNI-like 64 341 - -
Cmu11g1491 947 Gene3D Ribonuclease Inhibitor 24 297 IPR032675 -
Cmu11g1491 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 296 920 IPR051564 GO:0016020(PANTHER)
Cmu11g1491 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1491 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1491 947 FunFam leucine-rich repeat receptor-like protein kinase TDR 726 931 - -
Cmu11g1491 947 FunFam Receptor protein-tyrosine kinase CEPR1 276 561 - -
Cmu11g1491 947 Gene3D Transferase(Phosphotransferase) domain 1 726 938 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0759 Cmu-Chr2:8268616 Cmu11g1491 Cmu-Chr11:27250712 1.00E-85 dispersed
Cmu08g0811 Cmu-Chr8:20370923 Cmu11g1491 Cmu-Chr11:27250712 4.30E-76 dispersed
Cmu08g1136 Cmu-Chr8:23746096 Cmu11g1491 Cmu-Chr11:27250712 4.00E-180 dispersed
Cmu11g1491 Cmu-Chr11:27250712 Cmu05g0896 Cmu-Chr5:8162296 1.70E-61 dispersed
Cmu11g1490 Cmu-Chr11:27233589 Cmu11g1491 Cmu-Chr11:27250712 3.20E-95 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75948 PF00069 Pkinase 1.40E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1491 - - - 0.0