Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1503 ATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAATAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGGAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAACTTTGGTTTCTCACAAGATTCATTGA 465 46.45 MSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELIAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRTLVSHKIH 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27345412 27347134 + CmPI595203_11g015030.1 Cmu11g1503 430025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1503 154 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cmu11g1503 154 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 FunFam Profilin 1 131 - -
Cmu11g1503 154 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cmu11g1503 154 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cmu11g1503 154 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Cmu11g1503 154 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cmu11g1503 154 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1503 K05759 - - sly:543830 218.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1316 Cmu-Chr7:28482162 Cmu11g1503 Cmu-Chr11:27345412 3.00E-52 dispersed
Cmu11g0197 Cmu-Chr11:2441575 Cmu11g1503 Cmu-Chr11:27345412 7.40E-56 dispersed
Cmu11g0198 Cmu-Chr11:2444973 Cmu11g1503 Cmu-Chr11:27345412 5.60E-47 dispersed
Cmu11g1503 Cmu-Chr11:27345412 Cmu09g0024 Cmu-Chr9:537058 2.50E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.0e-214 740.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.2e-213 736.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.8e-211 729.6
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.5e-214 740.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.5e-215 743.8
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 719.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.7e-210 726.1
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.2e-209 723.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT2G19760 72.5 3.7e-55 211.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.3e-54 207.2
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT2G19760 79.3 1.1e-48 189.5
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.4e-52 199.9
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT4G29350 79.3 1.6e-47 185.7
Cmu11g0198 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29340 73.9 3.1e-57 218.0
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.4e-54 208.4
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.1e-52 200.7
Cmu11g0198 . 1 112 Cytoskeleton Gene Families AT4G29340 67.0 7.3e-43 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112