Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1503 ATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAATAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGGAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAACTTTGGTTTCTCACAAGATTCATTGA 465 46.45 MSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELIAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRTLVSHKIH 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27345412 27347134 + CmPI595203_11g015030.1 Cmu11g1503 430025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1503 154 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cmu11g1503 154 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 FunFam Profilin 1 131 - -
Cmu11g1503 154 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cmu11g1503 154 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cmu11g1503 154 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Cmu11g1503 154 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cmu11g1503 154 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cmu11g1503 154 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1316 Cmu-Chr7:28482162 Cmu11g1503 Cmu-Chr11:27345412 3.00E-52 dispersed
Cmu11g0197 Cmu-Chr11:2441575 Cmu11g1503 Cmu-Chr11:27345412 7.40E-56 dispersed
Cmu11g0198 Cmu-Chr11:2444973 Cmu11g1503 Cmu-Chr11:27345412 5.60E-47 dispersed
Cmu11g1503 Cmu-Chr11:27345412 Cmu09g0024 Cmu-Chr9:537058 2.50E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1503 K05759 - sly:543830 218.394