Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1510 ATGCAAACGTGGAGGGCGTCGTCTTCGCTTTCTGTGGGGATGATGGCTGTTACCTCCGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTACGTTAGGTACACACCAGAGCAAGTGGAAGCCCTTGAGAGGCTTTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTTATCAGGGAATGCCCAATTCTCTCCAATATCGAACCAAAGCAGATCAAAGTTTGGTTTCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCACGACTCCAGACTGTGAACAGGAAGCTTACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACGCAGAATGCGACCTTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAAGTCTTAAAGATTGGCCTTCTTGGTTTCGAGATTGCCGTGCCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTATACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAGAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTACAGTCCAGAACTTTGTAAGAGCAGAAATGCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCTTGGAGTGTACCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGCTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCACTTCGTGCTCTTAGCCAAAAATTGAGCAGAGGTTTCAATGAAGCAGTTAATGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCCATGAGCAACGCAGTGCTTTGTGCCAAAGCGTCGATGTTATTACAGAATGTTACTCCAGCAATGCTCATCAGGTTCTTAAGAGAACACCGGTCGGAATGGGCAGACAGTAGTATTGATGCTTACTCAGCAGCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTTATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGACGATATGCTCATGCCTGGTGACATCTTCCTTCTCCAACTTTGCAATGGTGTGGAGGAGAATGCAGTTGGTACGTCTGCTGAACTCATCTTTGCTCCAATTGATGCCTCCTTTTCTGATGATGCACCAATTCTACCATCTGGCTTCCGCATCATTCCACTCGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGATGTTGGACCTGCAGGGAATAGAACTTCTGGTGATTGTGCTGGTCAATCAGGAAATTCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTAGCCGCAATGGCACGACAGTATGTCAGGAGCATTATAGCATCTGTCCAGAGGGTGGCACTGGCTCTTTCCCCTTCGAATTTCGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAGACGCTTGCTCGTTGGATCTCTCAAAGCTATAGGTGCTATATGGGCATGGAGTTACTGAAGAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTCCTTTGTCTTCAAGGCGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTGTCCTATGAGAAAGCTGTGGCATGGAAGGTGACTTTGGTTTCGAATTCTATCAAAAATGCTTCGTACCGATCAAGATATTGTCATTATCTAGTTCAAGCTCAGTCTCCATTCCTTTTCAATTTTGGAAAAAGGATGTCTCTTTCAGTTCAGTTTCCTCCCATTGTGTAA 2643 45.63 MQTWRASSSLSVGMMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAESLKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPTVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVEENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRTSGDCAGQSGNSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWISQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVTLVSNSIKNASYRSRYCHYLVQAQSPFLFNFGKRMSLSVQFPPIV 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27425356 27433996 - CmPI595203_11g015100.1 Cmu11g1510 430032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1510 880 CDD bZIP 87 126 - -
Cmu11g1510 880 ProSiteProfiles 'Homeobox' domain profile. 30 94 IPR001356 GO:0003677(InterPro)
Cmu11g1510 880 ProSiteProfiles START domain profile. 169 383 IPR002913 GO:0008289(InterPro)
Cmu11g1510 880 SMART HOX_1 32 98 IPR001356 GO:0003677(InterPro)
Cmu11g1510 880 SMART START_1 178 388 IPR002913 GO:0008289(InterPro)
Cmu11g1510 880 Gene3D - 27 101 - -
Cmu11g1510 880 Pfam START domain 179 387 IPR002913 GO:0008289(InterPro)
Cmu11g1510 880 SUPERFAMILY Homeodomain-like 34 97 IPR009057 -
Cmu11g1510 880 Gene3D - 214 389 IPR023393 -
Cmu11g1510 880 Pfam Homeodomain 35 93 IPR001356 GO:0003677(InterPro)
Cmu11g1510 880 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cmu11g1510 880 CDD homeodomain 35 95 IPR001356 GO:0003677(InterPro)
Cmu11g1510 880 FunFam Homeobox-leucine zipper protein REVOLUTA 35 90 - -
Cmu11g1510 880 SUPERFAMILY Bet v1-like 178 388 - -
Cmu11g1510 880 Coils Coil 104 131 - -
Cmu11g1510 880 CDD START_ArGLABRA2_like 173 388 - -
Cmu11g1510 880 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 27 836 IPR044830 GO:0003700(InterPro)
Cmu11g1510 880 Pfam MEKHLA domain 714 836 IPR013978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0010 Cmu-Chr9:394931 Cmu11g1510 Cmu-Chr11:27425356 0.00E+00 dispersed
Cmu11g1510 Cmu-Chr11:27425356 Cmu01g2457 Cmu-Chr1:36523388 3.0e-310 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7175 PF01852 START 2.00E-53 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1510 K09338 - csv:101218438 1617.82