Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1513 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATTGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTGGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.28 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTLDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27448817 27449997 + CmPI595203_11g015130.1 Cmu11g1513 430035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1513 350 MobiDBLite consensus disorder prediction 216 242 - -
Cmu11g1513 350 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 PANTHER GATA TRANSCRIPTION FACTOR 39 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cmu11g1513 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Cmu11g1513 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cmu11g1513 350 MobiDBLite consensus disorder prediction 143 182 - -
Cmu11g1513 350 FunFam GATA transcription factor 236 322 - -
Cmu11g1513 350 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 Gene3D - 241 325 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu11g1513 350 MobiDBLite consensus disorder prediction 155 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1513 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0527 Cmu-Chr1:5521532 Cmu11g1513 Cmu-Chr11:27448817 3.20E-08 dispersed
Cmu05g2159 Cmu-Chr5:31073409 Cmu11g1513 Cmu-Chr11:27448817 3.10E-37 dispersed
Cmu07g1301 Cmu-Chr7:28285407 Cmu11g1513 Cmu-Chr11:27448817 3.50E-67 dispersed
Cmu08g0699 Cmu-Chr8:19286982 Cmu11g1513 Cmu-Chr11:27448817 6.50E-42 dispersed
Cmu09g0008 Cmu-Chr9:377878 Cmu11g1513 Cmu-Chr11:27448817 1.40E-74 dispersed
Cmu10g2097 Cmu-Chr10:26908398 Cmu11g1513 Cmu-Chr11:27448817 2.60E-27 dispersed
Cmu11g0395 Cmu-Chr11:4360847 Cmu11g1513 Cmu-Chr11:27448817 1.90E-31 dispersed
Cmu11g1513 Cmu-Chr11:27448817 Cmu08g1150 Cmu-Chr8:23900810 1.40E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1150 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.6e-69 257.7
Cmu11g1513 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 8.0e-67 251.1
Cmu01g1945 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.4e-42 167.5
Cmu10g1068 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.7 4.2e-139 491.9
Cmu09g1250 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.4e-134 476.9
Cmu10g1068 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7176 PF00320 GATA 3.20E-15 CL0167 Cmu TF