Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1513 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATTGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAACTTTGGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTAGTACCAGAATACCGACCGGCAGCCAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAGCAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.28 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTLDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSGFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27448817 27449997 + CmPI595203_11g015130.1 Cmu11g1513 430035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1513 350 MobiDBLite consensus disorder prediction 216 242 - -
Cmu11g1513 350 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 PANTHER GATA TRANSCRIPTION FACTOR 39 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cmu11g1513 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Cmu11g1513 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cmu11g1513 350 MobiDBLite consensus disorder prediction 143 182 - -
Cmu11g1513 350 FunFam GATA transcription factor 236 322 - -
Cmu11g1513 350 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g1513 350 Gene3D - 241 325 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu11g1513 350 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0527 Cmu-Chr1:5521532 Cmu11g1513 Cmu-Chr11:27448817 3.20E-08 dispersed
Cmu05g2159 Cmu-Chr5:31073409 Cmu11g1513 Cmu-Chr11:27448817 3.10E-37 dispersed
Cmu07g1301 Cmu-Chr7:28285407 Cmu11g1513 Cmu-Chr11:27448817 3.50E-67 dispersed
Cmu08g0699 Cmu-Chr8:19286982 Cmu11g1513 Cmu-Chr11:27448817 6.50E-42 dispersed
Cmu09g0008 Cmu-Chr9:377878 Cmu11g1513 Cmu-Chr11:27448817 1.40E-74 dispersed
Cmu10g2097 Cmu-Chr10:26908398 Cmu11g1513 Cmu-Chr11:27448817 2.60E-27 dispersed
Cmu11g0395 Cmu-Chr11:4360847 Cmu11g1513 Cmu-Chr11:27448817 1.90E-31 dispersed
Cmu11g1513 Cmu-Chr11:27448817 Cmu08g1150 Cmu-Chr8:23900810 1.40E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7176 PF00320 GATA 3.20E-15 CL0167 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1513 - - - 0.0