Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1516 ATGTCAACAAAGGAAGAATCTCAAATTTCCCAACATTCTTCCAATAACAATCAATCCAAACCCAACAAGCGCCTTCATGCTGATTCCAGCAAGCACCCAATGTACCGCGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCCCGCATTTGGCTCGGGACTTTCCCCACCCCTGAAATGGCCGCTCGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCATATGGACCCTAATTTCCTCCACTACTCTCCTAATTCCCCTGTTTCCACTTCCCCCTCCTCCGCCGCCGACGACGACTCCGACGAACTCACCGAAATCGTCAAACTCCCTACTCTCGGCTCCAACTACGATCACTTCATCTCTAACAACGAGTTCGTGCTGATGGACTCGACGGAGGGATGGGTTTATCCCCCGCCTTGGTTACGAACCATGGAGGATTGCGGCTACAATACCAACAATATTATTGACGATTTGGGAATTGGGGTTGGGGATAGTAATTGCTTATGGGATTATTAA 645 52.87 MSTKEESQISQHSSNNNQSKPNKRLHADSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPNSPVSTSPSSAADDDSDELTEIVKLPTLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDCGYNTNNIIDDLGIGVGDSNCLWDY 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27478290 27478934 - CmPI595203_11g015160.1 Cmu11g1516 430038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1516 214 CDD AP2 35 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1516 214 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Cmu11g1516 214 SMART rav1_2 34 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1516 214 Pfam AP2 domain 34 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1516 214 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1516 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 172 IPR051032 -
Cmu11g1516 214 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677(InterPro)
Cmu11g1516 214 MobiDBLite consensus disorder prediction 1 23 - -
Cmu11g1516 214 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1516 214 MobiDBLite consensus disorder prediction 1 35 - -
Cmu11g1516 214 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1516 214 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0937 Cmu-Chr6:13144561 Cmu11g1516 Cmu-Chr11:27478290 2.00E-49 dispersed
Cmu09g0172 Cmu-Chr9:1907440 Cmu11g1516 Cmu-Chr11:27478290 3.30E-39 dispersed
Cmu10g1090 Cmu-Chr10:3178844 Cmu11g1516 Cmu-Chr11:27478290 7.60E-37 dispersed
Cmu10g2650 Cmu-Chr10:33313386 Cmu11g1516 Cmu-Chr11:27478290 1.50E-23 dispersed
Cmu10g2651 Cmu-Chr10:33322369 Cmu11g1516 Cmu-Chr11:27478290 9.90E-27 dispersed
Cmu11g0216 Cmu-Chr11:2628146 Cmu11g1516 Cmu-Chr11:27478290 4.90E-40 dispersed
Cmu11g1516 Cmu-Chr11:27478290 Cmu11g1563 Cmu-Chr11:27894269 6.20E-20 dispersed
Cmu06g0243 Cmu-Chr6:2695589 Cmu11g1516 Cmu-Chr11:27478290 5.20E-34 transposed
Cmu08g0173 Cmu-Chr8:3727799 Cmu11g1516 Cmu-Chr11:27478290 2.80E-22 transposed
Cmu11g1516 Cmu-Chr11:27478290 Cmu08g1161 Cmu-Chr8:24030935 1.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7177 PF00847 AP2 7.90E-14 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1516 K09286 - csv:101217333 275.018