Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1533 ATGCAATTGGATTCGTTAAGGCTCTTTTCTGGTCCTCAGAAAAAGAAAACAATATATATCAGTAAAGCAACCAAAAGTGATAAATTGACTGTAAAAATGAGTGACAAGAGAGAGAATTCAGCTGATGAGGAAGTTGAAACAAAAGAGATGGATGATAGAAGTTTCACTCCAGATAATCAACCACAGGATGAGCGATACATTCACAAAGTTGGGGTTCCACCCAAGCAAAAACTCTACAAAGAAATCAAATCTGCAGTGAAAGAAACATTTTTCCCGGATGATCCTCTCCGTTCATTCAAGGATCAAACTAAGAGGCGGAAATTTATTCTCGGGGTCCAAGCCGTTTTTCCGATTCTTGATTGGGGAAGAACTTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACAATTGCTAGTCTTTGCATTCCACAGGATATTGGGTATGCCAAGCTTGCGAATTTGCCTCCAGAGTACGGTTTGTACTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACGCTGCTTCAAGCGGAAATCGATTCTGCTGCAAATCCAGAAGACTACAGGCGGCTGGCATTTACAGCTACATTCTTTGCGGGGATCACACAAGCCACCCTTGGAGTTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATCAAGAAATTCACAAAGAAAACAGATATTATCTCTGTTATGCAGTCAGTATTTGGCACAATCCGACACGGATGGAACTGGCAGACAATAGTGATTGCTGTAGCCTTCCTTGGCTTCCTTCTATTTGCAAAATTCATTGGGAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTGGTACTGTCTACCATTTTGGTATACATCACTCGTGCAGATAAGGAAGGAGTTGCAATTGTGAAACACATAGAGAAAGGAATCAATCCCCCATCTGTGAAAGACTTATATTTATCAGGCCAATACCTTCCAAAAGGGTTGAAGATCGGTATTGTGGCAGGAATGGTAGCACTGACGGAAGCCGTTGCAATTGGAAGAACGTTTGCTTCAATGAAAGACTATCAAATAGATGGGAACAAGGAAATGGTAGCAATGGGACTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAACAACAGGATCATTCTCTAGATCCGCCGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCTATTGTAGTACTCCTAACTTTGGCATTCCTCACCCCATTGTTCAAATATACTCCAAATGCAATTCTGTCCGCTATCATCATATCCGCTGTGATCAACCTGGTCGACTTGCATGCTGCGAAACTGATTTGGAAGATAGATAAATTCGATTTTGTTGCTTGTATGGGAGCCTTCCTTGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTATTGCGGTATCCATTTCCTTTGCCAAAATCCTTCTACAAGTTACCAGGCCAAGGACTGCAATTCTTGGAAAGATCCCGAGGACGACTGTTTACCGAAACATACTGCAATATCCTGAAGCAACCCAGGTTCCAGGGGTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTCGATGAGGAAGAACAAACGAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACTAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGTCTCAAGAAGAGAGAAATTCAGCTCATTTTAGCAAATCCGGGGCCCGTGGTGATCAACAAACTCCACGCATCGGAATTTGTAGATTTGATAGGCCAAGACCATATCTTCCTCACAGTTGCAGATGCAGTCTCATCTTGTAGTCCAAAGATAATGAACGACGTTTGA 2082 42.07 MQLDSLRLFSGPQKKKTIYISKATKSDKLTVKMSDKRENSADEEVETKEMDDRSFTPDNQPQDERYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKRRKFILGVQAVFPILDWGRTYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQAEIDSAANPEDYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMQSVFGTIRHGWNWQTIVIAVAFLGFLLFAKFIGKKNKRLFWVPAIAPLISVVLSTILVYITRADKEGVAIVKHIEKGINPPSVKDLYLSGQYLPKGLKIGIVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGLMNVVGSMTSCYVTTGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFLTPLFKYTPNAILSAIIISAVINLVDLHAAKLIWKIDKFDFVACMGAFLGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNILQYPEATQVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVINKLHASEFVDLIGQDHIFLTVADAVSSCSPKIMNDV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27641386 27645078 + CmPI595203_11g015330.1 Cmu11g1533 430055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1533 693 ProSitePatterns SLC26A transporters signature. 159 180 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cmu11g1533 693 MobiDBLite consensus disorder prediction 31 62 - -
Cmu11g1533 693 Pfam Sulfate permease family 130 511 IPR011547 GO:0016020(InterPro)
Cmu11g1533 693 CDD STAS_SulP_like_sulfate_transporter 563 678 - -
Cmu11g1533 693 ProSiteProfiles STAS domain profile. 562 685 IPR002645 -
Cmu11g1533 693 Gene3D STAS domain 542 688 IPR036513 -
Cmu11g1533 693 Coils Coil 598 618 - -
Cmu11g1533 693 PANTHER SULFATE TRANSPORTER 86 685 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu11g1533 693 FunFam Sulfate transporter 31 542 688 - -
Cmu11g1533 693 NCBIfam sulfate permease 117 681 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu11g1533 693 Pfam STAS domain 563 681 IPR002645 -
Cmu11g1533 693 SUPERFAMILY SpoIIaa-like 564 686 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1491 Cmu-Chr3:11271023 Cmu11g1533 Cmu-Chr11:27641386 1.00E-302 dispersed
Cmu07g0944 Cmu-Chr7:23719862 Cmu11g1533 Cmu-Chr11:27641386 2.10E-180 dispersed
Cmu11g0124 Cmu-Chr11:1759506 Cmu11g1533 Cmu-Chr11:27641386 2.40E-187 dispersed
Cmu09g1503 Cmu-Chr9:27550222 Cmu11g1533 Cmu-Chr11:27641386 5.30E-248 transposed
Cmu09g1932 Cmu-Chr9:35407142 Cmu11g1533 Cmu-Chr11:27641386 1.60E-108 transposed
Cmu11g1533 Cmu-Chr11:27641386 Cmu03g1490 Cmu-Chr3:11229215 1.80E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1533 K17470 - csv:101207370 1197.57