Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g1539 | ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGGGGGAACAGCAGCTGTAAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA | 1092 | 47.71 | MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAGGTAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27710984 | 27712075 | + | CmPI595203_11g015390.1 | Cmu11g1539 | 430061 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g1539 | 363 | Gene3D | AP2/ERF domain | 179 | 237 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g1539 | 363 | PRINTS | Ethylene responsive element binding protein signature | 180 | 191 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g1539 | 363 | PRINTS | Ethylene responsive element binding protein signature | 202 | 218 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g1539 | 363 | SMART | rav1_2 | 179 | 242 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g1539 | 363 | MobiDBLite | consensus disorder prediction | 286 | 326 | - | - | |
Cmu11g1539 | 363 | CDD | AP2 | 178 | 238 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g1539 | 363 | MobiDBLite | consensus disorder prediction | 273 | 326 | - | - | |
Cmu11g1539 | 363 | ProSiteProfiles | AP2/ERF domain profile. | 179 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g1539 | 363 | FunFam | Ethylene-responsive transcription factor 2 | 178 | 237 | - | - | |
Cmu11g1539 | 363 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 16 | 361 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cmu11g1539 | 363 | Pfam | AP2 domain | 179 | 228 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g1539 | 363 | SUPERFAMILY | DNA-binding domain | 179 | 236 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1833 | Cmu-Chr1:31976975 | Cmu11g1539 | Cmu-Chr11:27710984 | 5.90E-60 | dispersed | |
Cmu02g1738 | Cmu-Chr2:31283926 | Cmu11g1539 | Cmu-Chr11:27710984 | 1.90E-27 | dispersed | |
Cmu08g1036 | Cmu-Chr8:22680774 | Cmu11g1539 | Cmu-Chr11:27710984 | 4.70E-92 | dispersed | |
Cmu11g0292 | Cmu-Chr11:3444758 | Cmu11g1539 | Cmu-Chr11:27710984 | 8.60E-18 | dispersed | |
Cmu11g0603 | Cmu-Chr11:6597673 | Cmu11g1539 | Cmu-Chr11:27710984 | 7.50E-22 | dispersed | |
Cmu11g1539 | Cmu-Chr11:27710984 | Cmu02g1893 | Cmu-Chr2:32850581 | 2.90E-17 | dispersed | |
Cmu06g0784 | Cmu-Chr6:9616416 | Cmu11g1539 | Cmu-Chr11:27710984 | 5.00E-29 | transposed | |
Cmu11g1539 | Cmu-Chr11:27710984 | Cmu08g0485 | Cmu-Chr8:16303889 | 5.90E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7178 | PF00847 | AP2 | 2.80E-15 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g1539 | K09286 | - | csv:101214560 | 610.912 |