Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1539 ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCACAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCTCTCTCTACAAATTTCCCATCTTCTTCTTCTTCTTCTTCACCAACACCTAATCTCCTCCCTCCTTATTCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCACTCAACCCCTCAACAGTCCAGTTTGTACTCAAATGGCTGCTCCACTTCGATGAACTCAGTATTTTCAGATGGGTTCTCGAACCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCGCATCAATTATCATCACCTCAAATCCCCCATTCCCAAACTCAATTCAATCTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGGCAACAAAACCATCAACCACCATCCTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCTATTCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTATAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTGGCAGAGATCCGACTCCCAAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCTAGACTTAATTTCCCCAATCTCAAGCACCAAGGCTCCTGCGTTGAAGGCGAATTCGGCGAGTACAAGCCTCTACATTCCTCAGTAGCTGCAAAGCTCCAAGCAATTTGTGAAAACTTGGCCAAGCCGCAGAAACAAGGCAAGTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCGTGCTCCACGGCCGGGGGAACAGCAGCTGTAAAGGTGGAGAACTCCTCGTCACGGGCTGTCACAGAGAGTGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCGGAGATTGATTGGGCATCGATCTTACCTTAA 1092 47.71 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSSASSLSTNFPSSSSSSSPTPNLLPPYSSSFNSHLNFSHSTPQQSSLYSNGCSTSMNSVFSDGFSNQNLIGFEQPFTIGPHQLSSPQIPHSQTQFNLLQNQTPLAFAWGQQNHQPPSCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYKPLHSSVAAKLQAICENLAKPQKQGKSKKPVTAAKKSRSQSCSTAGGTAAVKVENSSSRAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27710984 27712075 + CmPI595203_11g015390.1 Cmu11g1539 430061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1539 363 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1539 363 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1539 363 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1539 363 SMART rav1_2 179 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1539 363 MobiDBLite consensus disorder prediction 286 326 - -
Cmu11g1539 363 CDD AP2 178 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1539 363 MobiDBLite consensus disorder prediction 273 326 - -
Cmu11g1539 363 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1539 363 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Cmu11g1539 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 361 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu11g1539 363 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1539 363 SUPERFAMILY DNA-binding domain 179 236 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1833 Cmu-Chr1:31976975 Cmu11g1539 Cmu-Chr11:27710984 5.90E-60 dispersed
Cmu02g1738 Cmu-Chr2:31283926 Cmu11g1539 Cmu-Chr11:27710984 1.90E-27 dispersed
Cmu08g1036 Cmu-Chr8:22680774 Cmu11g1539 Cmu-Chr11:27710984 4.70E-92 dispersed
Cmu11g0292 Cmu-Chr11:3444758 Cmu11g1539 Cmu-Chr11:27710984 8.60E-18 dispersed
Cmu11g0603 Cmu-Chr11:6597673 Cmu11g1539 Cmu-Chr11:27710984 7.50E-22 dispersed
Cmu11g1539 Cmu-Chr11:27710984 Cmu02g1893 Cmu-Chr2:32850581 2.90E-17 dispersed
Cmu06g0784 Cmu-Chr6:9616416 Cmu11g1539 Cmu-Chr11:27710984 5.00E-29 transposed
Cmu11g1539 Cmu-Chr11:27710984 Cmu08g0485 Cmu-Chr8:16303889 5.90E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7178 PF00847 AP2 2.80E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1539 K09286 - csv:101214560 610.912