Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1547 ATGAAGTTCTTGATGCTTTGCGAGGATGTCAACATTGCTTATATCACCGTCGGCAATGAGGTTGTCCCTGGCGATGCAGCTGCACCATTCCTCGCCACTGCCATTCAAAATATAATGCAAGCGCTTGTCAGTGTTGGCGTTCAAAGCGACTATCAAGTGGTAGCCATGGCAGCATTGGAAGTCTCATCCCCACCTTCAGCTGGAGTATTCACAGCCGCCGCCAGTGGAGCAATGAAAGACGTTGCAAACGTGTTGGGATCCTCCGGTGCAGCAATGCTGGTGAACGTGTACTCATATTTCGCATACGCATCAAACCCACAACAAATCTCACTCAATTACAATGTCTTCACATTCACTGTCCCCGTCGTAGTGGACGGAGATTTAAAGTACTTGAATATGTTCGATGCCATGGTGGATTCATTTTACGCGGCACTGGAGAAGATTGACGCCGGGGGAGTCAGAATCGAGATCTTGGAGACTGGGTGGCCCACCAAAGGAAATGAGCCATTCACGAGCATTGACAATGCATTGACTTATAACAAAAACCTCGTGATGCACTTGACTAGTGGAGTTGGAACCCCTAAAAGGCCTAATCTCAAATACGATGCCGTTTTATTCGAAATGTTCAATGAGGATCTTAAGGCCCCTGGAGTTGAGCAGAATTTTGGAAATTTTGTTTGTTTGTTTGTCTTTTCCTCTCTTTTCTTCTTCATTTTGATGTGTCAAGTTTGTGTTGCAGGTGGGTTCGGCGCGGTCGGAGTGAACTACGGGCTGAACGGCGACGATCTTCCGAAACCGGATGATGTCGTAAGCCTATATAAACGATGTGGAATAAATATTGTGCGAATATTTGAGCCGAACCATGGAGTTCTTGATGCTTTGAAAGGCAAGGAAAACTTAGCCTTGTGGCTAGGAACGAGAAATGAAGACATAGAGGGGTTTGCTACAAACCAAGTAGCGGCCAATGCTTGGGTTAATGATAATGTGGTTCCTTATTATAAGGATGTCAACATTGCTTATATCACCATAGGGAATGAGGTTGTCCCTAACGATGTAGCTGCACCATTTGTCGCCAATGCCATTAAAAATATCATGCAAGGGCTTGTTAATGCCGGCATCAAAAGTGACATCAAGGTGACGACAGTGGTAGCGATGTCAGCATTGGAAGTGTCGTACCCACCTTCAGCCGGAGCATTCACAGTCGCTGCTGCCGGAGTAGTGAAAGACATCGCGACCGTGTTGGGATCTTCAGGTGCACCAATATTGGTGAACGTGTACCCATATTTCGCATACGCATCGAACCCACAACAAATCTCACTCAGTTACGCGCTCTTCACATCCACCGCCCCCGTGGTGGTGGACGGAGATTTACAGTACTTTAATCTGTTCGACGCCATGGTGGATTCATTTTACGCGGCGCTGGAGAAGATTGACGCCGGGGAAGTGAAAATCGAGATTTCGGAGACTGGGTGGCCCAGCAAAGGAAACGAGCCATTCACGAGCCTTGACAATGCATTGACTTATAACAAAAACCTTGTGAAACATGTGACCAGCGGAGTTGGAACCCCTAAAAAGCCTAATCTCCCATACGATGCCGTTTTGTTTGAAATGTTCAATGAGGATCTTAAGGCGGCTGGGGCTGAGCAGAATTTTGGTATCAATCTCTTCAATTCGCTTCTTCCAATTCTCTCTTCGTTCTCGTCGTCTCTCGCATGGCGGACCAATAAGCATAAACTCAATTCACATTCCCTATCCGACGATAATTCGAATCCCCATTTCCCCCAACTTCTCCTCCGATTTCTTCTTCTATCTGCTCTCTTCTCCTACTCCCAACCTTATTGCATTCTTCTCAGACGCATTGCTTTGATACAGCCTACCCTTCAGCAGTTACCCCAACTCCTTTTGTTTTCCCTTCCTTCCAATTTCAATCGCTACTCTGAAGGTCCTGGAATCAAAGTTTATGTTACGCACCATGCTCTAGGAAGTGAACCTACATTAGTTCCAGAGTGGTTGAGAAGTTCTGGAAGTCTTTCTGGGAGTGGAATTTCAGCTCAACAATTTGCATCGTCTTCTTCACACTCAGATATTTCTTCTCAAGCTCATTACTCGAGGAGTAGAACTTCAAAGAGCATTAGCGATATAGATAAACCACATTTTGATTTCTTGGATTGGTCATCTTCATCAACCTCGAGGAGGAGTTCTAGTAATGGCTCTGGAAAGAATGCTTACAGTAGTTTTAATAGGAATCATCGTGATAGAGACCGTGAGAAGGAGAAAGAAATGTCAAATCTTGGGGACCCCTGGGGTTATGACCTTTCTAGCCCTCTGGTAAACATATTTTCCAGTAGAGTTGAGAAGGAAACTTTGCGGCGTTCTCATTCAATGGTATCTAGGAAGCAAGGTGATTTATTTCCTCAAAGAGTTGCTGCTGACTTGAAAAGTGGAGGATATAATCATAAGGCTAACAGTAATGGCTTTCATTCAGGAAGTACCATTAACGGTATCACTGATAAGGCTGTTTTTGACAAGGATTTTCCATCACTTGGATCAGAAGAAAGGCAAGGAGGACCAGATGTAGGGAGAGTATCATCTCCTGGCTTGACCACATCTGTTCAGAGCTTGCCTATTGGGAGTTCAACTTTGATTGGTCGGGAGGGATGGACATCAGCTTTGGCTGAGGTGCCAACTATTGTCACAGGCAGTTCTGCTGCTCCATCATCTGTTCAACAGACTGTTGCTGCCAATTCTGGGTTGGGGTCCCCAAATGCAACAACTCCACGCAAGATGGCTGAAGCTTTAACACAGGCACCAACAAGAGCCCGTGTTACTTCTCAGTCAACTGAGTTATCTGTCAAGACACAGAGGCTTGAGGAATTGGCTATTAAGCAGTCCAGGCAATTAATCCCAGTAACACCTTCAATGCCTAAAGTTTCTGTTCTTAGTTCTTTTGAAAAATCCAAGTCCAAAGGAGCATCCAGAACTGCTGAAATGAATGTGCCTGGCAAGAGCAGTCAACAACAGCTCTCTCTGGTGCAGCATAATAGTCAGCCTCTTCGAGGTGGACAAGTCAAGTCCGATTCTCCAAAAACCACTCATGGGAAGTTTCTGGTTCTCAAACCAGTATGGGAGAATGGTGTGTTAAAGGATGGCTCAAATCCTATTAGTAATGTTAACAGTAGAACTGCAAATTGCCAGCCCTCTTCTGTTGCCTCTTCAGCAACACCTAACACTTCAAGGAACCAAAACAACCTGAATCCTTCATCCTCTCTGGAGCGAAAGGTATCTGCTTTAGATCTGAAATCAGGACCCACTTTGGAAAAGAGACCTCCTTCTGTTCAATCGCAAAGCAGGAATGATTTCTTCAATCTCATAAAGAAGAAAACTTTGGTGAATGGTTCCACTTGTCTACAAGATTCAGGTATCTGCACATCTCCCATCAAGGAAAAATCTGGGACAGTGAATGGGGAAGTAGTTAGTGCCGCAGTACATCCTTCTACTGTTACAGACAATGAGGTAGCTAGCAATGGTGATACCACTGAAGAGGTTCAGAGGTTTTCTGAGGTTGTGAATAAGAGTTTGAGCCCTAACAAAGCATTATGTACAGACGAGGAAGAGGCTGCATTTCTTCGTTCTCTTGGATGGGAAGAAAATTCAGGAGAGGATGAAGGACTAACAGAGGAGGAGATCAATGCTTTTTATCAGCAGTACATGAACCTGAAGCCATCTTTGAAGCCGATCAGATCTGAAGATGGCACGCTAACAGTAGAGCGAAGACAGTTCGCCGCCCAGCCACACCGATCAGGGACCGGCGCCATTGCACGCCGCCGCTCACCTCCTTCCCCCACCAGTAAGCCTCTTTCTTCTCGCGGCCGGCCGGTCTATGCCGAATTAGGTGACGAGTTTGAGTGTTTTCTTCGGATTCATGTTAGTGTCCCTATCATACTAAGTTTGAGCAACAATGGCGGGAGGGAAGATGAAAAAGGAGAAGCCAAAAGCAGCGTTCAGAAATCTGGAATTAAGAGCACCGATGTGATACTCGAGATCGGTCCCGGTACTGGTAATCTCACCAAGAAGCTTCTAGAATGTGGTAAGATGGTTATTGCTGTCGAACTCGATCCTCGTATGGTTCTTGAGTTGCAGAGGCGATTTCAGGACACTCCCTACTCTTCTCGATTGAAGGTTATTCAAGGTGATGTACTCAAGACTGAGCTTCCTTATTTTGATATATGTGTGGCAAATATTCCTTATCAAATATCATCTCCTCTCACATTCAAATTGTTAAATCATGAACCTACTTTTCGGTGCGCCATCATAATGTTTCAGAGGGAATTTGCAATGAGGTTAGTTGCTCAACCAGGGGACAAACTTTACTGTCGTTTGACTGTGAACACCCAACTCCTAGCTCGAGTGTCTCATCTCCTCAAAGTTGGGAAGAATAACTTTCGTCCTCCGCCTAAGGTGGACTCGTCTGTCGTTCGAATTGAGCCAAGGAAACCGCGTATTGAGGTGAAACAGAAGGAGTGGGATGGATTCCTGAGAATCTGTTTCAACCGAAAGAACAAAACTCTTGGTTCGATTTTTAGGCAGAAGAGTGTTCTTTCTTTGCTAGAGAAGAACTACAAAACATTGTGTGCTCTCAATCTCCTTCAACAAGGTTTTGCAGATAATGTTGATGGTGATTTTGATTATTCAAGATTTGGCAATGAGGAGGATCAAACCATGGAAGTAGACGACGACGGAGATGAGGAGGAGATGGATATGGATGATGGTGATGCTGAAGGTGGGGAAGGGGAGGCTTCTGAATTTAAGGATAAAGTTATGGGTGTTTTAAAGGAGGGAGATTTTGAAGAAAAGAGATCTTCTAAACTCACTTTACAAGAGTTTTTATACCTACTCTCTTTGTTCAACAAAGCTGGTATACATTTTTCTTGA 4932 44.85 MKFLMLCEDVNIAYITVGNEVVPGDAAAPFLATAIQNIMQALVSVGVQSDYQVVAMAALEVSSPPSAGVFTAAASGAMKDVANVLGSSGAAMLVNVYSYFAYASNPQQISLNYNVFTFTVPVVVDGDLKYLNMFDAMVDSFYAALEKIDAGGVRIEILETGWPTKGNEPFTSIDNALTYNKNLVMHLTSGVGTPKRPNLKYDAVLFEMFNEDLKAPGVEQNFGNFVCLFVFSSLFFFILMCQVCVAGGFGAVGVNYGLNGDDLPKPDDVVSLYKRCGINIVRIFEPNHGVLDALKGKENLALWLGTRNEDIEGFATNQVAANAWVNDNVVPYYKDVNIAYITIGNEVVPNDVAAPFVANAIKNIMQGLVNAGIKSDIKVTTVVAMSALEVSYPPSAGAFTVAAAGVVKDIATVLGSSGAPILVNVYPYFAYASNPQQISLSYALFTSTAPVVVDGDLQYFNLFDAMVDSFYAALEKIDAGEVKIEISETGWPSKGNEPFTSLDNALTYNKNLVKHVTSGVGTPKKPNLPYDAVLFEMFNEDLKAAGAEQNFGINLFNSLLPILSSFSSSLAWRTNKHKLNSHSLSDDNSNPHFPQLLLRFLLLSALFSYSQPYCILLRRIALIQPTLQQLPQLLLFSLPSNFNRYSEGPGIKVYVTHHALGSEPTLVPEWLRSSGSLSGSGISAQQFASSSSHSDISSQAHYSRSRTSKSISDIDKPHFDFLDWSSSSTSRRSSSNGSGKNAYSSFNRNHRDRDREKEKEMSNLGDPWGYDLSSPLVNIFSSRVEKETLRRSHSMVSRKQGDLFPQRVAADLKSGGYNHKANSNGFHSGSTINGITDKAVFDKDFPSLGSEERQGGPDVGRVSSPGLTTSVQSLPIGSSTLIGREGWTSALAEVPTIVTGSSAAPSSVQQTVAANSGLGSPNATTPRKMAEALTQAPTRARVTSQSTELSVKTQRLEELAIKQSRQLIPVTPSMPKVSVLSSFEKSKSKGASRTAEMNVPGKSSQQQLSLVQHNSQPLRGGQVKSDSPKTTHGKFLVLKPVWENGVLKDGSNPISNVNSRTANCQPSSVASSATPNTSRNQNNLNPSSSLERKVSALDLKSGPTLEKRPPSVQSQSRNDFFNLIKKKTLVNGSTCLQDSGICTSPIKEKSGTVNGEVVSAAVHPSTVTDNEVASNGDTTEEVQRFSEVVNKSLSPNKALCTDEEEAAFLRSLGWEENSGEDEGLTEEEINAFYQQYMNLKPSLKPIRSEDGTLTVERRQFAAQPHRSGTGAIARRRSPPSPTSKPLSSRGRPVYAELGDEFECFLRIHVSVPIILSLSNNGGREDEKGEAKSSVQKSGIKSTDVILEIGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYFDICVANIPYQISSPLTFKLLNHEPTFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSVLSLLEKNYKTLCALNLLQQGFADNVDGDFDYSRFGNEEDQTMEVDDDGDEEEMDMDDGDAEGGEGEASEFKDKVMGVLKEGDFEEKRSSKLTLQEFLYLLSLFNKAGIHFS 1643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27749389 27773163 + CmPI595203_11g015470.1 Cmu11g1547 430069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1547 1643 Gene3D - 1501 1643 - -
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 746 764 - -
Cmu11g1547 1643 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1333 1538 IPR029063 -
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 725 767 - -
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 1565 1600 - -
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 981 1032 - -
Cmu11g1547 1643 Pfam Glycosyl hydrolases family 17 252 553 IPR000490 GO:0004553(InterPro)|GO:0005975(InterPro)
Cmu11g1547 1643 Pfam Glycosyl hydrolases family 17 7 225 IPR000490 GO:0004553(InterPro)|GO:0005975(InterPro)
Cmu11g1547 1643 FunFam glucan endo-1,3-beta-glucosidase, basic 252 559 - -
Cmu11g1547 1643 CDD AdoMet_MTases 1345 1427 - -
Cmu11g1547 1643 FunFam rRNA adenine N(6)-methyltransferase 1328 1500 - -
Cmu11g1547 1643 SUPERFAMILY (Trans)glycosidases 9 223 IPR017853 -
Cmu11g1547 1643 SUPERFAMILY (Trans)glycosidases 252 553 IPR017853 -
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 845 870 - -
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 1050 1091 - -
Cmu11g1547 1643 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 1315 1564 IPR001737 -
Cmu11g1547 1643 Gene3D Vaccinia Virus protein VP39 1326 1499 IPR029063 -
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 725 745 - -
Cmu11g1547 1643 PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 662 1247 - -
Cmu11g1547 1643 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 1332 1542 IPR011530 GO:0000179(InterPro)|GO:0006364(InterPro)
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 1572 1595 - -
Cmu11g1547 1643 Pfam Ribosomal RNA adenine dimethylase 1332 1541 IPR001737 -
Cmu11g1547 1643 Gene3D Glycosidases 252 558 - -
Cmu11g1547 1643 Gene3D Glycosidases 2 226 - -
Cmu11g1547 1643 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 1345 1372 IPR020596 GO:0000154(InterPro)|GO:0000179(InterPro)
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 997 1029 - -
Cmu11g1547 1643 SMART rADcneu6 1329 1498 IPR020598 GO:0000154(InterPro)|GO:0000179(InterPro)
Cmu11g1547 1643 MobiDBLite consensus disorder prediction 1259 1291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1547 K14191 - - csv:101213356 1036.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1658 Cmu-Chr3:19810235 Cmu11g1547 Cmu-Chr11:27749389 3.30E-68 dispersed
Cmu03g2114 Cmu-Chr3:29571964 Cmu11g1547 Cmu-Chr11:27749389 3.00E-58 dispersed
Cmu01g0864 Cmu-Chr1:10426749 Cmu11g1547 Cmu-Chr11:27749389 1.50E-19 transposed
Cmu01g1934 Cmu-Chr1:32696700 Cmu11g1547 Cmu-Chr11:27749389 3.50E-60 transposed
Cmu06g1026 Cmu-Chr6:17762682 Cmu11g1547 Cmu-Chr11:27749389 1.40E-153 transposed
Cmu11g1547 Cmu-Chr11:27749389 Cmu03g1508 Cmu-Chr3:11735971 1.30E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g330 . . . . Bpe02g00082 . . Bma01g02637 Cmo04g02433 Cmo15g00734 Cma01g01407 Cma09g00662 . . . Cpe06g00518 . . . . . . . . . . . . . . . . . . . Lsi04g02363 Csa04g01832 . . Blo17g00198 Blo18g00201 Bda11g00747 Bda13g01502 Bpe02g01618 Bpe14g00363 Bma01g00845 Bma02g00242 . Cmo01g01457 Cmo09g00647 . . Car04g02246 Car15g00660 Cpe01g02020 Cpe02g00535 Bhi09g02636 . . . . . . Cla11g01513 Cam11g1573 Cec11g1602 Cco11g1600 Clacu11g1728 Cmu11g1547 Cre11g1963 . . Chy07g00685 Cme07g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006749 0 4 0 0 0 0 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 7 3 0 37