Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1565 ATGGGAGCTGAATCAGGGCTTGCAATGTTTTGTGGAATAATTCATAAAATAAAACCCTACTTAGCTATGATTTCCTTGCAATTTGGATATGCAGGGATGTATATTGTCACGATGCTTTGTCTTAAGAAGGGCATGAACCATTACGTTCTCGCCGTTTATCGACACGTCGTTGCCACCATTGTCATCTCTCCCTTCGCCATCGTCCTCGAAAGAAAAATAAGGCCAAATATGACATTCCCAATCTTTGCACGAATATTGCTCCTCGGTTTTCTCGAGCCAGTGTTGGATCAAAATCTATACTATGTGGGTTTGAAACTTACTTCAGCAACATTCACTTCTGTCACCATCAATATTCTCCCTGCAGTAACCTTCATTATGGCTCTCATTTTCAGGCTAGAAAGTGTGAATTTGAAGAAGATTCGTAGCATCGCGAAGGTGGTAGGAACATTGGTGACAATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCAATCGTCGACATATTCCACGGCCATGGACGCCACGCCGCCCACCACAGTACTGAGTCCGCCGACCAGCACTGGGTCCTCGGAACCCTCATGCTTCTCGGCAGCATCGTCGGCTGGTCCGGTTTCTTCATCTTGCAATCCTTCACACTGAGGAAATACCCGGCGGAGCTGTCGTTGACCGCCCTGATATGCGTGGCCGGCACGGTGGAGGGCTCCATTGTGACGCTTATTATGGAGCGTGACTTTAGCGTGTGGGCCATTGGCTGGGACTCTCGCCTTCTTGCCGCTGTTTATACCGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGAGTGGTGATTCGGGAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACCGCCGTCCTTGGCTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATCGGAGCTATTTTCATAGTGATGGGGCTATACTTAGTGGTGTGGGGCAAAGCCAAGGACCATCTAAACAAATTGACGAATCAAAAAAGCGGCGCCACCACCACCGAATTACCGATCACCGCCGAGCCGGAAACCACCGCCACCGCCGAGCGTTGTTCTTCCAAGGCTCCACCGGCGTGA 1125 49.07 MGAESGLAMFCGIIHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHVVATIVISPFAIVLERKIRPNMTFPIFARILLLGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNLKKIRSIAKVVGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHHSTESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICVAGTVEGSIVTLIMERDFSVWAIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAVLGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHLNKLTNQKSGATTTELPITAEPETTATAERCSSKAPPA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27922639 27925557 + CmPI595203_11g015650.1 Cmu11g1565 430087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1565 374 MobiDBLite consensus disorder prediction 349 374 - -
Cmu11g1565 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Cmu11g1565 374 PANTHER WAT1-RELATED PROTEIN 21 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu11g1565 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 333 - -
Cmu11g1565 374 Pfam EamA-like transporter family 23 149 IPR000620 GO:0016020(InterPro)
Cmu11g1565 374 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020(InterPro)
Cmu11g1565 374 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1277 Cmu-Chr11:24927259 Cmu11g1565 Cmu-Chr11:27922639 1.20E-55 dispersed
Cmu11g1324 Cmu-Chr11:25447424 Cmu11g1565 Cmu-Chr11:27922639 4.80E-93 dispersed
Cmu11g1565 Cmu-Chr11:27922639 Cmu11g1598 Cmu-Chr11:28284051 2.80E-36 dispersed
Cmu06g0865 Cmu-Chr6:11563697 Cmu11g1565 Cmu-Chr11:27922639 1.80E-70 transposed
Cmu11g1565 Cmu-Chr11:27922639 Cmu08g0509 Cmu-Chr8:16935199 3.10E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1565 - - - 0.0