Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1565 ATGGGAGCTGAATCAGGGCTTGCAATGTTTTGTGGAATAATTCATAAAATAAAACCCTACTTAGCTATGATTTCCTTGCAATTTGGATATGCAGGGATGTATATTGTCACGATGCTTTGTCTTAAGAAGGGCATGAACCATTACGTTCTCGCCGTTTATCGACACGTCGTTGCCACCATTGTCATCTCTCCCTTCGCCATCGTCCTCGAAAGAAAAATAAGGCCAAATATGACATTCCCAATCTTTGCACGAATATTGCTCCTCGGTTTTCTCGAGCCAGTGTTGGATCAAAATCTATACTATGTGGGTTTGAAACTTACTTCAGCAACATTCACTTCTGTCACCATCAATATTCTCCCTGCAGTAACCTTCATTATGGCTCTCATTTTCAGGCTAGAAAGTGTGAATTTGAAGAAGATTCGTAGCATCGCGAAGGTGGTAGGAACATTGGTGACAATCGGCGGAGCAATGGTGATGACTCTATACAAAGGACCAATCGTCGACATATTCCACGGCCATGGACGCCACGCCGCCCACCACAGTACTGAGTCCGCCGACCAGCACTGGGTCCTCGGAACCCTCATGCTTCTCGGCAGCATCGTCGGCTGGTCCGGTTTCTTCATCTTGCAATCCTTCACACTGAGGAAATACCCGGCGGAGCTGTCGTTGACCGCCCTGATATGCGTGGCCGGCACGGTGGAGGGCTCCATTGTGACGCTTATTATGGAGCGTGACTTTAGCGTGTGGGCCATTGGCTGGGACTCTCGCCTTCTTGCCGCTGTTTATACCGGTGTGATATGCTCTGGACTTGCATATTACATACAAGGAGTGGTGATTCGGGAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACCGCCGTCCTTGGCTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATCGGAGCTATTTTCATAGTGATGGGGCTATACTTAGTGGTGTGGGGCAAAGCCAAGGACCATCTAAACAAATTGACGAATCAAAAAAGCGGCGCCACCACCACCGAATTACCGATCACCGCCGAGCCGGAAACCACCGCCACCGCCGAGCGTTGTTCTTCCAAGGCTCCACCGGCGTGA 1125 49.07 MGAESGLAMFCGIIHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHVVATIVISPFAIVLERKIRPNMTFPIFARILLLGFLEPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNLKKIRSIAKVVGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHHSTESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICVAGTVEGSIVTLIMERDFSVWAIGWDSRLLAAVYTGVICSGLAYYIQGVVIRERGPVFVTSFTPLCMIITAVLGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHLNKLTNQKSGATTTELPITAEPETTATAERCSSKAPPA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27922639 27925557 + CmPI595203_11g015650.1 Cmu11g1565 430087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1565 374 MobiDBLite consensus disorder prediction 349 374 - -
Cmu11g1565 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Cmu11g1565 374 PANTHER WAT1-RELATED PROTEIN 21 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu11g1565 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 333 - -
Cmu11g1565 374 Pfam EamA-like transporter family 23 149 IPR000620 GO:0016020(InterPro)
Cmu11g1565 374 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020(InterPro)
Cmu11g1565 374 MobiDBLite consensus disorder prediction 349 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1565 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1277 Cmu-Chr11:24927259 Cmu11g1565 Cmu-Chr11:27922639 1.20E-55 dispersed
Cmu11g1324 Cmu-Chr11:25447424 Cmu11g1565 Cmu-Chr11:27922639 4.80E-93 dispersed
Cmu11g1565 Cmu-Chr11:27922639 Cmu11g1598 Cmu-Chr11:28284051 2.80E-36 dispersed
Cmu06g0865 Cmu-Chr6:11563697 Cmu11g1565 Cmu-Chr11:27922639 1.80E-70 transposed
Cmu11g1565 Cmu-Chr11:27922639 Cmu08g0509 Cmu-Chr8:16935199 3.10E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g285 . . . Bda03g00533 . Bpe04g00487 . . . . . . . . . . . Bhi04g01971 . . . . . . . . . . . . . Cone4ag1395 Cone7ag1542 . . Lsi04g02384 . . Cme03g01505 . . . Bda13g01485 . . . . . . . . . . . . . . . . . . . . Cla11g01531 Cam11g1590 Cec11g1619 Cco11g1620 Clacu11g1749 Cmu11g1565 Cre11g1981 . . . Cme07g00859
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu07g1091 . 1 755 Nodulin-like Gene Family AT4G19180 61.2 2.9e-250 861.7
Cmu11g1598 . 19 279 Nodulin-like Gene Family AT3G45870 70.5 2.3e-99 359.0
Cmu09g1806 . 33 392 Nodulin-like Gene Family AT3G28050 58.8 1.3e-113 406.8
Cmu10g1098 . 2 335 Nodulin-like Gene Family AT5G47470 60.6 1.9e-104 376.3
Cmu01g0401 . 7 338 Nodulin-like Gene Family AT5G47470 58.6 1.2e-101 367.1
Cmu09g1806 . 31 354 Nodulin-like Gene Family AT5G40230 54.0 8.1e-92 334.3
Cmu09g1806 . 24 354 Nodulin-like Gene Family AT5G40240 52.3 2.6e-90 329.3
Cmu10g2203 . 6 364 Nodulin-like Gene Family AT5G40240 50.4 2.6e-90 329.3
Cmu10g2202 . 12 335 Nodulin-like Gene Family AT5G40240 50.8 6.2e-84 308.1
Cmu05g1911 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.2e-85 311.2
Cmu08g1406 . 89 355 Nodulin-like Gene Family AT3G53210 57.3 2.0e-84 309.3
Cmu04g0881 . 99 360 Nodulin-like Gene Family AT2G37450 59.8 1.9e-82 302.8
Cmu07g0361 . 98 332 Nodulin-like Gene Family AT2G37450 56.6 5.8e-68 254.6
Cmu07g0362 . 98 334 Nodulin-like Gene Family AT2G37450 55.7 1.3e-67 253.4
Cmu08g0509 . 97 337 Nodulin-like Gene Family AT2G37450 50.4 1.2e-65 246.9
Cmu11g1565 . 104 336 Nodulin-like Gene Family AT2G37450 54.5 3.0e-64 242.3
Cmu09g1924 . 100 333 Nodulin-like Gene Family AT2G37450 51.5 9.0e-61 230.7
Cmu04g0881 . 12 338 Nodulin-like Gene Family AT2G37460 67.6 9.1e-123 437.2
Cmu07g0362 . 11 334 Nodulin-like Gene Family AT2G37460 57.4 5.7e-101 364.8
Cmu07g0361 . 11 332 Nodulin-like Gene Family AT2G37460 57.1 1.0e-97 354.0
Cmu11g1565 . 16 343 Nodulin-like Gene Family AT2G37460 54.8 3.8e-97 352.1
Cmu08g0509 . 3 330 Nodulin-like Gene Family AT2G37460 50.5 1.4e-94 343.6
Cmu04g0632 . 13 362 Nodulin-like Gene Family AT2G37460 51.0 3.4e-93 339.0
Cmu09g1924 . 10 333 Nodulin-like Gene Family AT2G37460 55.7 7.5e-93 337.8
Cmu09g1926 . 8 331 Nodulin-like Gene Family AT2G37460 53.1 9.8e-93 337.4
Cmu10g2382 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 3.3e-88 322.4
Cmu08g1406 . 77 468 Nodulin-like Gene Family AT1G75500 72.5 3.9e-161 564.7
Cmu05g1911 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 6.0e-154 540.8
Cmu06g1512 . 21 347 Nodulin-like Gene Family AT1G75500 62.2 1.9e-115 412.9
Cmu05g2565 . 1 366 Nodulin-like Gene Family AT1G60050 50.8 1.0e-94 344.0
Cmu07g0362 . 8 361 Nodulin-like Gene Family AT2G39510 59.6 6.6e-118 421.0
Cmu07g0361 . 12 341 Nodulin-like Gene Family AT2G39510 61.6 6.4e-113 404.4
Cmu04g0881 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 1.6e-111 399.8
Cmu09g1926 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 1.6e-108 389.8
Cmu09g1924 . 13 334 Nodulin-like Gene Family AT2G39510 59.2 8.4e-105 377.5
Cmu11g1565 . 18 335 Nodulin-like Gene Family AT2G39510 57.0 9.9e-98 354.0
Cmu04g0632 . 16 339 Nodulin-like Gene Family AT2G39510 52.0 5.6e-93 338.2
Cmu10g2382 . 16 340 Nodulin-like Gene Family AT2G39510 52.1 6.9e-91 331.3
Cmu08g0509 . 2 257 Nodulin-like Gene Family AT4G08290 63.5 1.6e-87 319.7
Cmu11g1565 . 14 263 Nodulin-like Gene Family AT4G08290 52.9 4.9e-73 271.6
Cmu11g1565 . 12 355 Nodulin-like Gene Family AT4G08300 66.3 8.1e-124 440.7
Cmu08g0509 . 7 356 Nodulin-like Gene Family AT4G08300 50.7 8.7e-94 340.9
Cmu04g0881 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 5.6e-85 311.6
Cmu02g0076 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.4e-77 286.6
Cmu01g1520 . 1 236 Nodulin-like Gene Family AT5G64700 53.3 2.0e-60 229.6
Cmu11g1277 . 1 368 Nodulin-like Gene Family AT4G30420 53.8 3.3e-104 375.6
Cmu11g1324 . 6 406 Nodulin-like Gene Family AT5G07050 63.4 3.0e-140 495.4
Cmu10g2382 . 10 342 Nodulin-like Gene Family AT5G07050 68.0 1.7e-127 453.0
Cmu04g0632 . 10 339 Nodulin-like Gene Family AT5G07050 64.3 2.1e-122 436.0
Cmu11g1565 . 18 336 Nodulin-like Gene Family AT5G07050 52.1 7.2e-94 341.3
Cmu09g1926 . 8 331 Nodulin-like Gene Family AT5G07050 50.8 7.2e-86 314.7
Cmu04g0632 . 13 357 Nodulin-like Gene Family AT3G56620 58.8 9.0e-107 384.0
Cmu11g1324 . 14 338 Nodulin-like Gene Family AT3G56620 56.4 5.3e-99 358.2
Cmu05g2565 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 7.6e-106 380.9
Cmu01g1043 . 73 401 Nodulin-like Gene Family AT1G09380 61.5 7.8e-111 397.5
Cmu02g1471 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.0e-110 397.1
Cmu10g1098 . 92 325 Nodulin-like Gene Family AT4G16620 50.2 2.3e-56 216.1
Cmu04g0632 . 13 352 Nodulin-like Gene Family AT2G40900 60.6 3.5e-109 392.1
Cmu10g2382 . 12 363 Nodulin-like Gene Family AT2G40900 53.4 1.0e-105 380.6
Cmu11g1324 . 14 333 Nodulin-like Gene Family AT2G40900 56.9 3.8e-100 362.1
Cmu06g1512 . 15 365 Nodulin-like Gene Family AT3G18200 68.5 3.2e-128 455.3
Cmu08g1406 . 89 433 Nodulin-like Gene Family AT3G18200 57.7 8.3e-108 387.5
Cmu05g1911 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 3.7e-100 362.1
Cmu11g1565 . 12 355 Nodulin-like Gene Family AT1G44800 64.3 7.5e-122 434.1
Cmu08g0509 . 7 349 Nodulin-like Gene Family AT1G44800 51.6 7.0e-96 347.8
Cmu04g0632 . 12 339 Nodulin-like Gene Family AT1G44800 50.3 1.2e-87 320.5
Cmu11g1598 . 103 373 Nodulin-like Gene Family AT5G45370 68.7 2.2e-102 369.0
Cmu11g1565 . 12 313 Nodulin-like Gene Family AT1G21890 65.4 2.4e-114 409.1
Cmu08g0509 . 6 307 Nodulin-like Gene Family AT1G21890 50.8 8.7e-88 320.9
Cmu10g2382 . 15 318 Nodulin-like Gene Family AT1G21890 52.9 1.8e-85 313.2
Cmu04g0881 . 11 311 Nodulin-like Gene Family AT1G21890 50.3 7.9e-81 297.7
Cmu07g1214 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.0e-187 652.5
Cmu07g1108 . 4 417 Nodulin-like Gene Family AT4G19450 65.7 1.9e-145 512.7
Cmu06g0062 . 44 442 Nodulin-like Gene Family AT4G19450 57.7 3.5e-128 455.3
Cmu06g1699 . 7 538 Nodulin-like Gene Family AT1G74780 58.2 9.6e-179 623.6
Cmu06g1701 . 13 481 Nodulin-like Gene Family AT1G74780 58.1 2.1e-154 542.7
Cmu06g1700 . 6 459 Nodulin-like Gene Family AT1G74780 56.7 2.2e-143 506.1
Cmu02g1181 . 9 540 Nodulin-like Gene Family AT4G34950 70.2 6.3e-221 763.8
Cmu02g0440 . 10 514 Nodulin-like Gene Family AT4G34950 66.4 1.6e-203 706.1
Cmu11g0775 . 6 592 Nodulin-like Gene Family AT5G14120 68.9 8.7e-234 806.6
Cmu02g1181 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 2.1e-151 532.3
Cmu02g0440 . 5 368 Nodulin-like Gene Family AT2G16660 67.7 2.6e-141 498.8
Cmu05g2184 . 12 565 Nodulin-like Gene Family AT2G39210 70.6 1.5e-228 789.3
Cmu05g2186 . 3 559 Nodulin-like Gene Family AT2G39210 64.3 1.8e-202 702.6
Cmu03g0880 . 19 575 Nodulin-like Gene Family AT2G39210 59.6 5.7e-188 654.4
Cmu08g0725 . 28 550 Nodulin-like Gene Family AT2G39210 56.2 6.3e-179 624.4
Cmu03g0870 . 1 184 Nodulin-like Gene Family AT2G39210 51.6 6.8e-48 189.1
Cmu07g1108 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.7e-147 519.2
Cmu06g0062 . 50 589 Nodulin-like Gene Family AT3G01630 50.4 3.8e-141 498.8
Cmu11g0775 . 6 429 Nodulin-like Gene Family AT3G01930 69.4 5.3e-167 584.3
Cmu06g1699 . 10 537 Nodulin-like Gene Family AT1G18940 54.5 1.2e-165 580.1
Cmu06g1701 . 7 481 Nodulin-like Gene Family AT1G18940 54.6 4.7e-146 515.0
Cmu06g1700 . 3 459 Nodulin-like Gene Family AT1G18940 54.5 1.1e-137 487.3
Cmu06g1699 . 6 539 Nodulin-like Gene Family AT2G34350 56.2 2.0e-160 562.8
Cmu06g1701 . 11 477 Nodulin-like Gene Family AT2G34350 54.7 6.0e-141 498.0
Cmu06g1700 . 8 459 Nodulin-like Gene Family AT2G34350 53.8 1.2e-130 463.8
Cmu03g0880 . 15 569 Nodulin-like Gene Family AT2G28120 70.3 4.0e-223 771.2
Cmu05g2184 . 9 568 Nodulin-like Gene Family AT2G28120 61.8 1.4e-196 682.9
Cmu05g2186 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 1.8e-175 612.8
Cmu03g0877 . 8 581 Nodulin-like Gene Family AT2G28120 54.1 1.1e-167 587.0
Cmu03g0875 . 2 544 Nodulin-like Gene Family AT2G28120 51.0 6.3e-160 561.2
Cmu08g0725 . 24 534 Nodulin-like Gene Family AT2G28120 52.0 6.5e-157 551.2
Cmu03g0879 . 3 545 Nodulin-like Gene Family AT2G28120 50.3 2.2e-144 509.6
Cmu03g0870 . 1 184 Nodulin-like Gene Family AT2G28120 52.1 3.5e-49 193.4
Cmu07g1108 . 4 570 Nodulin-like Gene Family AT1G31470 56.4 1.0e-165 580.5
Cmu06g0062 . 50 596 Nodulin-like Gene Family AT1G31470 56.3 6.8e-162 567.8
Cmu09g0924 . 27 216 Nodulin-like Gene Family AT1G76800 76.8 1.4e-71 266.2
Cmu08g0641 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.1e-69 257.7
Cmu09g1420 . 10 202 Nodulin-like Gene Family AT1G76800 62.2 1.1e-58 223.4
Cmu09g1420 . 9 202 Nodulin-like Gene Family AT3G25190 68.5 1.1e-64 243.4
Cmu08g0641 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 7.4e-61 230.7
Cmu09g0924 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 5.9e-58 221.1
Cmu08g0641 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 5.9e-73 270.8
Cmu09g0924 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 4.7e-70 261.2
Cmu09g1420 . 7 202 Nodulin-like Gene Family AT1G21140 61.2 7.3e-63 237.3
Cmu08g0641 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 2.9e-72 268.5
Cmu09g0924 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 6.8e-69 257.3
Cmu09g1420 . 7 199 Nodulin-like Gene Family AT3G43630 61.1 2.2e-59 225.7
Cmu08g0641 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 6.5e-72 267.3
Cmu09g0924 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 3.6e-70 261.5
Cmu09g1420 . 7 202 Nodulin-like Gene Family AT3G43660 61.9 8.0e-62 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003731 1 1 1 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 2 3 4 1 44