Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g1570 | ATGAAAATTGGGATTCAAAATAAGCGTGGTGGTGACATCCTTGCTCCGCTACTCGCCTTCTCCAGCCTTTATTTCCCGAATCACCGGTTTTGCTATAACTTCATCAAAGAAGAAGAAAACCTAGAAAAGATTACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTGTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACACCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA | 684 | 47.08 | MKIGIQNKRGGDILAPLLAFSSLYFPNHRFCYNFIKEEENLEKITGASGPGSDSEAILVVNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27969861 | 27972852 | - | CmPI595203_11g015700.1 | Cmu11g1570 | 430092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g1570 | 227 | Pfam | ATP synthase subunit C | 79 | 138 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cmu11g1570 | 227 | Pfam | ATP synthase subunit C | 159 | 217 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cmu11g1570 | 227 | FunFam | V-type proton ATPase proteolipid subunit | 73 | 224 | - | - | |
Cmu11g1570 | 227 | NCBIfam | V-type ATPase subunit C | 75 | 183 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cmu11g1570 | 227 | SUPERFAMILY | F1F0 ATP synthase subunit C | 149 | 218 | IPR035921 | - | |
Cmu11g1570 | 227 | Gene3D | - | 73 | 224 | IPR035921 | - | |
Cmu11g1570 | 227 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 151 | 218 | - | - | |
Cmu11g1570 | 227 | SUPERFAMILY | F1F0 ATP synthase subunit C | 76 | 139 | IPR035921 | - | |
Cmu11g1570 | 227 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 75 | 142 | - | - | |
Cmu11g1570 | 227 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 65 | 221 | - | GO:0016021(PANTHER) | |
Cmu11g1570 | 227 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 118 | 142 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cmu11g1570 | 227 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 92 | 116 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cmu11g1570 | 227 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 169 | 195 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cmu11g1570 | 227 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 196 | 219 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1392 | Cmu-Chr8:26090486 | Cmu11g1570 | Cmu-Chr11:27969861 | 3.00E-75 | dispersed | |
Cmu08g1393 | Cmu-Chr8:26094244 | Cmu11g1570 | Cmu-Chr11:27969861 | 3.00E-75 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g1570 | K02155 | - | ath:AT1G19910 | 287.345 |