Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1570 ATGAAAATTGGGATTCAAAATAAGCGTGGTGGTGACATCCTTGCTCCGCTACTCGCCTTCTCCAGCCTTTATTTCCCGAATCACCGGTTTTGCTATAACTTCATCAAAGAAGAAGAAAACCTAGAAAAGATTACCGGAGCGTCGGGACCAGGATCGGATTCGGAAGCTATTTTGGTTGTTAATCCAATGGCGTCTACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGGGCTGCTGCAGCTCTTGTTTTCTCATGCATGGGTGCTGCTTATGGGACTGCTAAGAGTGGAGTTGGAGTGGCTTCCATGGGAGTCATGCGACCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGGTTGATCATCGCTGTTATTATCAGTACCGGAATAAACCCAAAAGCTAAGTCTTACTATTTGTTTGATGGGTATGCACACCTGTCTTCTGGGCTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCAATTGGGATTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAACCTAAGCTCTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCTCTTGCCCTCTACGGTCTCATTGTTGGTATCATTCTTTCATCTCGGGCAGGCCAATCTCGTGCAGATTAA 684 47.08 MKIGIQNKRGGDILAPLLAFSSLYFPNHRFCYNFIKEEENLEKITGASGPGSDSEAILVVNPMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27969861 27972852 - CmPI595203_11g015700.1 Cmu11g1570 430092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1570 227 Pfam ATP synthase subunit C 79 138 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cmu11g1570 227 Pfam ATP synthase subunit C 159 217 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cmu11g1570 227 FunFam V-type proton ATPase proteolipid subunit 73 224 - -
Cmu11g1570 227 NCBIfam V-type ATPase subunit C 75 183 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu11g1570 227 SUPERFAMILY F1F0 ATP synthase subunit C 149 218 IPR035921 -
Cmu11g1570 227 Gene3D - 73 224 IPR035921 -
Cmu11g1570 227 CDD ATP-synt_Vo_c_ATP6C_rpt2 151 218 - -
Cmu11g1570 227 SUPERFAMILY F1F0 ATP synthase subunit C 76 139 IPR035921 -
Cmu11g1570 227 CDD ATP-synt_Vo_c_ATP6C_rpt1 75 142 - -
Cmu11g1570 227 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 65 221 - GO:0016021(PANTHER)
Cmu11g1570 227 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 142 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu11g1570 227 PRINTS Vacuolar ATP synthase 16kDa subunit signature 92 116 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu11g1570 227 PRINTS Vacuolar ATP synthase 16kDa subunit signature 169 195 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cmu11g1570 227 PRINTS Vacuolar ATP synthase 16kDa subunit signature 196 219 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1392 Cmu-Chr8:26090486 Cmu11g1570 Cmu-Chr11:27969861 3.00E-75 dispersed
Cmu08g1393 Cmu-Chr8:26094244 Cmu11g1570 Cmu-Chr11:27969861 3.00E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1570 K02155 - ath:AT1G19910 287.345