Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1577 ATGGCGGAGATAGCGGTGTTCGACGGAGAAGCGGCGGAGAGAGTGGTGGCGGAGCTGAGGGAGAGCTATAATTCCGGCAAAACGCGAAGCTACGAATGGAGAGTGAATCAATTGAAAAATCTGTTGAAATTGGTTTGTGAAAACGAAGAAGAGATGGTTCAAACCGTTCATTCCGATCTTTATAAACCCGAATTTGAAGCCTTCGCTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGGAGCAATTGTTCCAGAACCTTTCGGTGTCGTCCTTATCATTTCTGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAAGAACATCATCTTTGATGGCAAAACTTTTGGCGAAATATTTGGATACATCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCCGAAACTAATGCTTTGTTGGAGCAGAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGGATAGTGATGGCAGCTGCTGCCAAGCATCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGAAATCAATTTACAAGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCTCCTGACTATATCATAACACCGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTTAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAAACACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAGTTTCTGGCAAGATCGTGCATGGAGGTGAAAAGGACAAAACAAAGCTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCACTAATTATGACGGAGGAGATATTTGGTCCCCTACTTCCCATTCTCACGGTCGACAAGGTGGAGGACAGCTTCGAAATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACTAACAACAAGAAGCTCAAGGAACGATTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGAAACCGCCTTACATCTGACGATTAGCACGTTACCGTTCGGAGGAGTTGGAGAGAGTGGAATGGGAGCTTACCATGGAAAGTTCTCCTTTGATGCATTTAGCCACAAGAAGGCCGTTCTTTATCGAAGTTTCGCAGGCGATGCGCCGATGAGATATCCGCCATACACAAAGGGAAAGCTCAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTTTACTTGGCGCGTGGAGCACACGCGCTTTGTTTGTGGCATGGCAAATCGAGAAATGGAGAATGACAGATGAGGTGACACCGATGACCGATTTAAGAAAATATGAAGCAAATGAAAATACGAGACCTCCATCTTTACGATTCGCCAGCTCCCTGAAATCTCTCCGATTACTCCCTCTCCCAAGGAACACTCCAATCCGTTACTACAACTTCTCCCTCTTTCTCTGTATATACTGA 1671 44.46 MAEIAVFDGEAAERVVAELRESYNSGKTRSYEWRVNQLKNLLKLVCENEEEMVQTVHSDLYKPEFEAFAHEIALLKGSCKLALKELRRWMAPEKVKTSITTFPSSGAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAKLLAKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASRRIIAGKWGCNNGQACIAPDYIITPKEFAPKLVESLKQELERFYGKNPLETKDLSRIVNAKHFDRLTRLLDDDKVSGKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPILTVDKVEDSFEIVNSGTKPLAAYLFTNNKKLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGAWSTRALFVAWQIEKWRMTDEVTPMTDLRKYEANENTRPPSLRFASSLKSLRLLPLPRNTPIRYYNFSLFLCIY 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28077477 28087887 + CmPI595203_11g015770.1 Cmu11g1577 430099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1577 556 PIRSF ALDH 2 475 IPR012394 GO:0006081(InterPro)
Cmu11g1577 556 FunFam Aldehyde dehydrogenase 221 421 - -
Cmu11g1577 556 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
Cmu11g1577 556 SUPERFAMILY ALDH-like 13 456 IPR016161 GO:0016491(InterPro)
Cmu11g1577 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
Cmu11g1577 556 CDD ALDH_F3FHI 12 443 - -
Cmu11g1577 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 20 439 IPR016162 GO:0016491(InterPro)
Cmu11g1577 556 FunFam Aldehyde dehydrogenase 20 224 - -
Cmu11g1577 556 Pfam Aldehyde dehydrogenase family 2 441 IPR015590 GO:0016491(InterPro)
Cmu11g1577 556 PANTHER ALDEHYDE DEHYDROGENASE 11 481 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1577 K00128 - - csv:101219329 865.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0895 Cmu-Chr7:22732549 Cmu11g1577 Cmu-Chr11:28077477 1.20E-135 dispersed
Cmu11g1577 Cmu-Chr11:28077477 Cmu11g1578 Cmu-Chr11:28087913 2.70E-232 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g1068 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.2e-212 733.8
Cmu02g1657 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cmu06g1740 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.2e-153 539.3
Cmu06g1740 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.1e-250 861.7
Cmu02g1657 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 8.3e-247 849.7
Cmu06g1068 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 3.1e-161 565.5
Cmu02g1657 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 6.2e-170 594.0
Cmu06g1740 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.0e-165 577.4
Cmu06g1068 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cmu11g1577 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.2e-181 633.3
Cmu11g1578 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 5.3e-177 617.8
Cmu11g1577 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cmu11g1578 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.7e-176 615.1
Cmu02g2308 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.7e-117 419.9
Cmu07g0895 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 6.9e-184 640.6
Cmu02g2308 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cmu02g1870 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.9 8.2e-215 743.4
Cmu09g1597 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 4.9e-240 827.4
Cmu01g1773 . 285 719 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.3e-181 632.5
Cmu06g1717 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.8 7.9e-252 866.3
Cmu06g1717 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 1.1e-253 872.5
Cmu02g1700 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.2e-269 922.9
Cmu01g1411 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 8.0e-261 896.3
Cmu06g0445 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.1e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56