Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1578 ATGTCGGAAACGAAGGTGTTCGATGCGGCGGCGGCGACGGAGTTGGTGAAGGAACTGAGAGGTAGTTTTGGCTCCGGCAACACTCGGAGCTACGAGTGGAGAGTGGCGCAGCTTGAGAGTCTCTTGAAGCTCAGCGTTGACCATGAGGAAGATATTTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGCGTTGGAATCCGTTATTCATGAGATATCTATGGTAAAAAGTTCGTGTAAATTGGCACTTAAAGAACTCAGAAATTGGATGACACCAGAGAAGGTTCAAACTACAATTACCAGTTTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTGGGTGTTGTGCTGATCATCTCCGCTTGGAATTATCCATTCTATTTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCTCCAGCAACAGCATCTTTAATAGCAAAACTTCTTGAGAAGTATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTATTCCCGAAACTAGTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGAATAGTGATGGCAGCTGCTGCCAAGCACCTTACGCCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAAAAATCAATTTACAAGTTGCCTGTAGGCGGATTATATCTGGTAAATGGGGTGGTAACAATGGACAAGCATGTGTTTCTCCTGATTACATCATAACTACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGATTTTATGGAAAGAATCCGTTGGAATCTAAAGATATATCTCGCATTGTGAATGCTAGCCACTTTAATCGCTTGACCAAGCTCTTAGATGATGATGAAGTTTCTAGCAAGATTGTTCATGGAGGTGAAAAGGACAAAACCAAATTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCTTTGATTATGACGGAGGAGATATTTGGTCCCTTGCTTCCCATTATCACGGTAGACAAATTGGAGGACAGCTTCGAAATAGTGAATTCGGGCTCAAAGCCACTTGCAGCATATTTATTTACCAACAACAAAAAGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGCGGCGTGGTTATCAATGACACCACCTTACATCTAGCTGTTAGCACACTACCATTTGGAGGAGTAGGGGAGAGTGGAATGGGATCTTGCCATGGGAAGTTTTCATTTGATGCATTTAGCCATAAGAAAGCTGTTCTTTATCGAAGTTTTGTAGGCGACGTGCCGATGCGATACCCACCTTACACAAACGGAAAGCTTAGATTTCTCAAAGCTCTTCTTGGAGGTGGCATTTTGGAGCTCATTCGTGCCCTTCTTGGTTGGTCGTAA 1455 43.85 MSETKVFDAAAATELVKELRGSFGSGNTRSYEWRVAQLESLLKLSVDHEEDICDALRSDLSKPALESVIHEISMVKSSCKLALKELRNWMTPEKVQTTITSFPSSAAIVPEPLGVVLIISAWNYPFYLSLDPVVGAIAAGNAVVLKPSEISPATASLIAKLLEKYLDTSAVKVVEGAIPETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSKINLQVACRRIISGKWGGNNGQACVSPDYIITTKEFAPKLVESLKQELERFYGKNPLESKDISRIVNASHFNRLTKLLDDDEVSSKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKLEDSFEIVNSGSKPLAAYLFTNNKKLKEQFVACISAGGVVINDTTLHLAVSTLPFGGVGESGMGSCHGKFSFDAFSHKKAVLYRSFVGDVPMRYPPYTNGKLRFLKALLGGGILELIRALLGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28087913 28093068 + CmPI595203_11g015780.1 Cmu11g1578 430100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1578 484 SUPERFAMILY ALDH-like 14 458 IPR016161 GO:0016491(InterPro)
Cmu11g1578 484 Pfam Aldehyde dehydrogenase family 8 441 IPR015590 GO:0016491(InterPro)
Cmu11g1578 484 PIRSF ALDH 1 476 IPR012394 GO:0006081(InterPro)
Cmu11g1578 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
Cmu11g1578 484 FunFam Aldehyde dehydrogenase 20 224 - -
Cmu11g1578 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
Cmu11g1578 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 439 IPR016162 GO:0016491(InterPro)
Cmu11g1578 484 PANTHER ALDEHYDE DEHYDROGENASE 11 482 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
Cmu11g1578 484 FunFam Aldehyde dehydrogenase 221 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0105 Cmu-Chr9:1195504 Cmu11g1578 Cmu-Chr11:28087913 1.30E-16 dispersed
Cmu11g1577 Cmu-Chr11:28077477 Cmu11g1578 Cmu-Chr11:28087913 2.70E-232 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1578 K00128 - csv:101219569 884.404