Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1591 ATGACTTTGAGTGGGCCCTACCACCAGGACTTCTCATCCTCAAGCCGATGCAAGTTCTCAGTGGTACCCTTAGACCACTTCTACGTGGTGTTGGGAATGAAATTCCTAATTGAGGCAAAGATTTTTCCTCATCTTGTCCCAACTTGCAAAGAAACCAATCCCAATCTGACGCGGGAAAAGCAAAACCCTATTTGCTGTGCAGTGGAGGGTGGATCAAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATAGTAGGGCTCCCTTTTTTCCTTGCTTTCGTTTCACTAGTTTCTCAGAATGTGTTGCATTATCTCAACCATCGTTCATTTCTCCGATTGACAGTCGACCGAAGCAAGTGAAAGATGTGGCGTATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTGGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACACACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATTTGATTAGTGTATCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAGCTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTTGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCGTAA 1320 44.47 MTLSGPYHQDFSSSSRCKFSVVPLDHFYVVLGMKFLIEAKIFPHLVPTCKETNPNLTREKQNPICCAVEGGSKWRHCCRALNHGWRNSRAPFFPCFRFTSFSECVALSQPSFISPIDSRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGSFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28221108 28230778 + CmPI595203_11g015910.1 Cmu11g1591 430113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1591 439 Gene3D - 279 342 - -
Cmu11g1591 439 Pfam RCF1/5-like, AAA+ ATPase lid domain 288 325 - -
Cmu11g1591 439 SMART AAA_5 144 277 IPR003593 GO:0016887(InterPro)
Cmu11g1591 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 324 IPR027417 -
Cmu11g1591 439 Pfam ATPase family associated with various cellular activities (AAA) 148 276 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu11g1591 439 CDD AAA 129 269 - -
Cmu11g1591 439 FunFam Replication factor C subunit 4 343 432 - -
Cmu11g1591 439 Gene3D - 343 433 - -
Cmu11g1591 439 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 119 435 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cmu11g1591 439 CDD HLD_clamp_RFC 277 336 IPR047854 -
Cmu11g1591 439 Gene3D - 116 276 IPR027417 -
Cmu11g1591 439 SUPERFAMILY post-AAA+ oligomerization domain-like 343 432 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cmu11g1591 439 FunFam Replication factor C subunit 4 279 342 - -
Cmu11g1591 439 FunFam Replication factor C subunit 5 112 277 - -
Cmu11g1591 439 Pfam Replication factor C C-terminal domain 344 428 IPR013748 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1183 Cmu-Chr10:4503770 Cmu11g1591 Cmu-Chr11:28221108 2.10E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1591 K10755 - csv:101221224 584.334