Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1591 ATGACTTTGAGTGGGCCCTACCACCAGGACTTCTCATCCTCAAGCCGATGCAAGTTCTCAGTGGTACCCTTAGACCACTTCTACGTGGTGTTGGGAATGAAATTCCTAATTGAGGCAAAGATTTTTCCTCATCTTGTCCCAACTTGCAAAGAAACCAATCCCAATCTGACGCGGGAAAAGCAAAACCCTATTTGCTGTGCAGTGGAGGGTGGATCAAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATAGTAGGGCTCCCTTTTTTCCTTGCTTTCGTTTCACTAGTTTCTCAGAATGTGTTGCATTATCTCAACCATCGTTCATTTCTCCGATTGACAGTCGACCGAAGCAAGTGAAAGATGTGGCGTATCAGGATGAAGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCATATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTGGCAATTTCTCACCAACTATTCGGTCCCGAACTTTACAAGTCCAGAGTTTTAGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACGGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACACACTCTAAAGTGACACGCTTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAAGTTATGAGCAAGCGTATATTGCATATTAGTAATGAAGAAGGTCTTAGTCTAGATGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATTTGATTAGTGTATCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTCACTGCTTGTAAAAGTGGTAGCTTTGATATTGCAAACAAGGAAGTCAACAATGTGCTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAAGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTTGTCGATGGCGCGGATGAATATTTGCAACTGCTCGATGTGGTTAGTCAAATGATGCAAGCTTTAAGCAGTATGCAATCGTAA 1320 44.47 MTLSGPYHQDFSSSSRCKFSVVPLDHFYVVLGMKFLIEAKIFPHLVPTCKETNPNLTREKQNPICCAVEGGSKWRHCCRALNHGWRNSRAPFFPCFRFTSFSECVALSQPSFISPIDSRPKQVKDVAYQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDALFTACKSGSFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQMMQALSSMQS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28221108 28230778 + CmPI595203_11g015910.1 Cmu11g1591 430113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1591 439 Gene3D - 279 342 - -
Cmu11g1591 439 Pfam RCF1/5-like, AAA+ ATPase lid domain 288 325 - -
Cmu11g1591 439 SMART AAA_5 144 277 IPR003593 GO:0016887(InterPro)
Cmu11g1591 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 324 IPR027417 -
Cmu11g1591 439 Pfam ATPase family associated with various cellular activities (AAA) 148 276 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu11g1591 439 CDD AAA 129 269 - -
Cmu11g1591 439 FunFam Replication factor C subunit 4 343 432 - -
Cmu11g1591 439 Gene3D - 343 433 - -
Cmu11g1591 439 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 119 435 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cmu11g1591 439 CDD HLD_clamp_RFC 277 336 IPR047854 -
Cmu11g1591 439 Gene3D - 116 276 IPR027417 -
Cmu11g1591 439 SUPERFAMILY post-AAA+ oligomerization domain-like 343 432 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cmu11g1591 439 FunFam Replication factor C subunit 4 279 342 - -
Cmu11g1591 439 FunFam Replication factor C subunit 5 112 277 - -
Cmu11g1591 439 Pfam Replication factor C C-terminal domain 344 428 IPR013748 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1591 K10755 - - csv:101221224 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1183 Cmu-Chr10:4503770 Cmu11g1591 Cmu-Chr11:28221108 2.10E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G14700 65.5 5.8e-220 761.1
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G12620 67.8 2.0e-228 789.3
Cmu08g1512 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Cmu07g0520 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.6e-152 535.0
Cmu06g0359 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 1.2e-152 537.0
Cmu11g0788 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 2.8e-92 335.5
Cmu09g2159 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.9e-246 847.8
Cmu10g2068 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Cmu01g2390 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Cmu02g0504 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cmu11g0351 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cmu01g2539 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Cmu09g0496 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cmu02g1962 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.4e-163 571.2
Cmu02g1962 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.6e-143 505.8
Cmu09g0850 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cmu10g2776 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Cmu09g1547 . 9 629 Core DNA Replication Machinery Family AT2G14050 79.0 8.3e-286 979.5
Cmu02g1192 . 1908 2312 Core DNA Replication Machinery Family AT2G20980 56.5 1.3e-116 416.8
Cmu09g0256 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT1G19080 68.5 1.4e-63 239.6
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT3G55490 68.5 1.4e-63 239.6
Cmu05g0160 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Cmu02g1237 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Cmu04g1203 . 151 768 Core DNA Replication Machinery Family AT1G67630 60.1 2.5e-207 718.8
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu08g0150 . 26 452 Core DNA Replication Machinery Family AT5G41880 62.8 1.3e-165 579.7
Cmu01g1468 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Cmu10g2486 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu01g0526 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.3e-37 151.4
Cmu02g2187 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Cmu09g1964 . 85 1107 Core DNA Replication Machinery Family AT1G08260 76.7 0.0e+00 1671.0
Cmu02g2187 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Cmu09g1964 . 107 1107 Core DNA Replication Machinery Family AT2G27120 74.7 0.0e+00 1599.3
Cmu04g1310 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.5 2.9e-121 432.6
Cmu04g1309 . 638 804 Core DNA Replication Machinery Family AT5G22110 60.5 1.2e-47 188.0
Cmu02g2237 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Cmu10g1183 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.8e-173 604.4
Cmu04g0515 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cmu11g1591 . 119 437 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cmu08g0537 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Cmu11g0152 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.8e-245 843.6
Cmu10g0955 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 1.0e-195 680.2
Cmu06g1609 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.9e-249 856.3
Cmu10g0955 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 1.8e-227 786.2
Cmu06g1609 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.9e-241 830.1
Cmu10g0955 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.9e-224 775.4
Cmu03g2373 . 1 401 Core DNA Replication Machinery Family AT5G26680 82.8 2.3e-188 655.2
Cmu05g0297 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 1.2e-297 1019.6
Cmu07g1546 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Cmu02g2147 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.3e-288 986.5
Cmu02g2147 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.9e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010443 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 29