Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1593 ATGCTGAAGCCGAAACCCTTCATCGGAGCTAATGTGTTCGTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGTCCTAACGATTATCATGTTATCTCCTCGGCCGATCACGAAAAGTTCGAGGATCTTCGCGCGAAGGGATGCAAGTTGCTAGGTCCTCAGTGTGTGATGTCATGTGCAAAAGAGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATACGAAAGCCTCTCTAGATGTCAGCTTTGTTATTGCTAAGAATGCTTTGGCTGCGAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCCTCCATTTTCTGGATTGAATATTTCGGTATCTAGAATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATACTCTGCCGATCTTACGAGAAAGTGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGAAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCCGGAACTTCAAATAAAATGACGAGGGGCTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAACTGTACCGTCCTCATTTATTGCTGATTCAAATTTCGCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTTCCAGTTGGCATGGGAAAGAACAAAGAAAACACCAATAATTGTATTGCGAATGACTTTCAGTCTGAAGACAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGAAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCAGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCCATCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCAGCTTCAGGAGTCATTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTAGTAGACACATGGCATATGATGAACTGATTCCTAAAGGTTTGATATCCAGTAAAACGAGCACCATCGTCATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCATGCCATCAAATGTGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAGTGACAGAGGAAACAATTCAAGAAAAAAGTGAAACAAACGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACAATGTGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCGTGGTTCCAAATGGGAATTCATCATGTGTGTTTAGGGGAAAAATATTTTGTTTTTCTAGTTCCTTCCCAGAAGATCGGAGAGGTGAAATTGTTGAATGGATAAATCAAGGGGGAGGTGAGGTTGTTGAAGATCGTATGAGGAAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGGGTACAGATGTGCATACTACTTACGTATCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGACACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAAGATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGTAAGTTTTCCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAGTTACAGCTGAATGGATATATGAATGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCCGCGGGCATATGCACTGTCAGTCAGTTTCCTACTCAAGCCGTCCAAATGATAGCCAGTGAAAGTGAATCCCAGTTCCCCATCAATTCTGCTGTCCCGAGAGACCAATCAGCTGGAACTAATAGTAGCACTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAAGCGCAAGTTCCTTGACGAAGCTGTACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCAGTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCCTCTGTACTAACTTCACATGTCCCTGATGTCGCTGCTGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTACTTTTCCACCTGACTGTTCGGTCGTTGGTCAAGAACATTCAGAAGCTCCTCCAATTGGTGGTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACATTAGCAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGACTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCCGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTGA 2883 41.97 MLKPKPFIGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCKLLGPQCVMSCAKEYRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHTKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVPPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCDKYKVARTWGRINIVTRKWFDQSIARKACLNEESYPVGSISGTSNKMTRGCLTAHNSQEKVTGNLQTVPSSFIADSNFAAVSGPGFSDMDFEASQSTSMFSDASHFINEVDVEVPVGMGKNKENTNNCIANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTNWLEDCDRQKKEIPILSRHMAYDELIPKGLISSKTSTIVMDRNKVPNVHPIMPSNVLEGNIHVRIGKTSVTEETIQEKSETNVSGDRTMKLSQKSQQCVANGTNKSQEKMRRDFVVPNGNSSCVFRGKIFCFSSSFPEDRRGEIVEWINQGGGEVVEDRMRKKVHFTVECHGEIPRGTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLSGFEKIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGTKYEAACKWGIHSVTAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGICTVSQFPTQAVQMIASESESQFPINSAVPRDQSAGTNSSTIGEVEQISFTKKKRKFLDEAVQKRSLFVGNSSSHFDCNLNSTKETTSKSSVLTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTGCDKSTFPPDCSVVGQEHSEAPPIGGLSNQWSKRAERKEDISNPTTGDGSVGIYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMT 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28242104 28258999 - CmPI595203_11g015930.1 Cmu11g1593 430115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1593 960 Gene3D BRCT domain 650 743 IPR036420 -
Cmu11g1593 960 SUPERFAMILY BRCT domain 618 737 IPR036420 -
Cmu11g1593 960 ProSiteProfiles BRCT domain profile. 653 736 IPR001357 -
Cmu11g1593 960 SUPERFAMILY BRCT domain 557 642 IPR036420 -
Cmu11g1593 960 SUPERFAMILY BRCT domain 57 185 IPR036420 -
Cmu11g1593 960 CDD BRCT_TopBP1_rpt3 360 444 - -
Cmu11g1593 960 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 958 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Cmu11g1593 960 SUPERFAMILY BRCT domain 363 447 IPR036420 -
Cmu11g1593 960 MobiDBLite consensus disorder prediction 884 922 - -
Cmu11g1593 960 ProSiteProfiles BRCT domain profile. 182 261 IPR001357 -
Cmu11g1593 960 Gene3D BRCT domain 342 450 IPR036420 -
Cmu11g1593 960 Gene3D BRCT domain 550 646 IPR036420 -
Cmu11g1593 960 CDD BRCT 103 170 - -
Cmu11g1593 960 Gene3D BRCT domain 24 94 IPR036420 -
Cmu11g1593 960 ProSiteProfiles BRCT domain profile. 361 453 IPR001357 -
Cmu11g1593 960 MobiDBLite consensus disorder prediction 518 537 - -
Cmu11g1593 960 Pfam BRCA1 C Terminus (BRCT) domain 366 439 IPR001357 -
Cmu11g1593 960 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Cmu11g1593 960 Gene3D BRCT domain 97 185 IPR036420 -
Cmu11g1593 960 SMART BRCT_7 97 174 IPR001357 -
Cmu11g1593 960 SMART BRCT_7 363 443 IPR001357 -
Cmu11g1593 960 SMART BRCT_7 555 630 IPR001357 -
Cmu11g1593 960 SMART BRCT_7 184 251 IPR001357 -
Cmu11g1593 960 SMART BRCT_7 650 726 IPR001357 -
Cmu11g1593 960 Gene3D BRCT domain 186 261 IPR036420 -
Cmu11g1593 960 MobiDBLite consensus disorder prediction 511 537 - -
Cmu11g1593 960 FunFam Transcription coactivator 343 453 - -
Cmu11g1593 960 FunFam Transcription coactivator 551 646 - -
Cmu11g1593 960 SUPERFAMILY BRCT domain 185 262 IPR036420 -
Cmu11g1593 960 ProSiteProfiles BRCT domain profile. 553 640 IPR001357 -
Cmu11g1593 960 Pfam twin BRCT domain 191 243 IPR001357 -
Cmu11g1593 960 Pfam twin BRCT domain 657 718 IPR001357 -
Cmu11g1593 960 Pfam twin BRCT domain 103 166 IPR001357 -
Cmu11g1593 960 CDD BRCT_TopBP1_rpt2_like 185 251 - -
Cmu11g1593 960 FunFam Transcription coactivator 97 185 - -
Cmu11g1593 960 FunFam Transcription coactivator 36 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1593 K10728 - - csv:101212525 1677.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44