Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g1595 | ATGGAATCAAGTATGGAAGCAAGAGATACTGTTGCCGAGAAGTGCCTTGACTTTCATTCAAATGCAAAACGAAAGCGGCATTCTAAACGGTTGAAATCACTTTCAGTAGGCCTAGCAACAATGGAAGACAATGATAATGGAATGTCGCATGAGAAGGAAGGAAATCTTGTTGTAGATAAGTTGTATGTTGGTGAATCTTTCAAGATTCTAGGGATTGGAAGATTGGAAGAAATTTTGTGGTCATCAATCCAAGAATCAAGTATGGAAGCAAGAGATACTGTTGCTAAGAAGTTCCTTGACTCTCATTCAAATGCACAACAAAAGTGGCGTTGTAAACGTTTGAAATCACTTTCAGTAGGCCTAGCAACAATGGAAGATGGTGATAGTGGAATATCGCAGGAGAAGGAAGGAATTCTTGTTGCAGATAAGTTGTGTGTGGACGAATCTCAAGATTTTGGGGGTCCACTCGTGAGAGAGGTAGTACCTGTGACCTTACAAGATTGGAGGAAATTGTCTACAAGATTGAAAGAAATTTTGTGGTCACCAATCCAATTGAGATATAATATGACGGAAGCTTGGCAAAGAGCTTATCTTTTTCAAAAGATGGGTAAGCTATGGAGAGCAGGAAAATCACGGATTGTTTCCAAAATTCAAATGGCTTCTAGTGATGAGGAGCTTGTTAAATTGAAGCCAAACAATATACAATCGATGTACGATTGGATGGACTTTGTGAAAGAAAAGAAAAGTGAAAAATTCAAGGATCGTATTGAAAAATTTGATAATGAAGGGACAAACACTTCTTCAACTAATGTGAACAATAACGCAATAAGTAAAGTTCTTGGTCCTAATCGTGGTCATATTAGAGGACTTGGGTTTGGAGGAAATACAAGTGATCAAATCTCGAATGCTACAAATGAACCTGTGATTAACAATATTGCTATTGACCTTGTTGTATCTTCACCTTTGAGTGTTAACAATAATAATAATGATCTCCGCAAGTGCAAGTTGCTAGATTGGTGCGGTACAGGAAATGTAGATGCTGAAGGTCGATGGTCTTCAAGTGACCCGAAAGTTCTTGTTCATCATGTTTCCCTTGGTCCACAAGCAGTAAAAGTTTGGGTAGACTTGCCAATAAAAGATGATGTATTTTTATGGAGGCCAAACTCAGAAATGACATACATTGAAGATGCAATAGGTAGTACAGCTGCATGGCCGTCTGACAAAGTTCTAATTAAAAATCAAGAACAAGATCAAGATCAAGATCATCAAGAAAGAAAGAAAGAAAGAAATAAAGAAATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATCGACATCTTGGATAAATATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCGCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA | 1935 | 38.14 | MESSMEARDTVAEKCLDFHSNAKRKRHSKRLKSLSVGLATMEDNDNGMSHEKEGNLVVDKLYVGESFKILGIGRLEEILWSSIQESSMEARDTVAKKFLDSHSNAQQKWRCKRLKSLSVGLATMEDGDSGISQEKEGILVADKLCVDESQDFGGPLVREVVPVTLQDWRKLSTRLKEILWSPIQLRYNMTEAWQRAYLFQKMGKLWRAGKSRIVSKIQMASSDEELVKLKPNNIQSMYDWMDFVKEKKSEKFKDRIEKFDNEGTNTSSTNVNNNAISKVLGPNRGHIRGLGFGGNTSDQISNATNEPVINNIAIDLVVSSPLSVNNNNNDLRKCKLLDWCGTGNVDAEGRWSSSDPKVLVHHVSLGPQAVKVWVDLPIKDDVFLWRPNSEMTYIEDAIGSTAAWPSDKVLIKNQEQDQDQDHQERKKERNKEMGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN | 644 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28268144 | 28281179 | + | CmPI595203_11g015950.1 | Cmu11g1595 | 430117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g1595 | 644 | CDD | MADS_MEF2_like | 434 | 512 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cmu11g1595 | 644 | SUPERFAMILY | SRF-like | 434 | 528 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | ProSiteProfiles | K-box domain profile. | 516 | 602 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu11g1595 | 644 | ProSitePatterns | MADS-box domain signature. | 435 | 489 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 433 | 611 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cmu11g1595 | 644 | ProSiteProfiles | MADS-box domain profile. | 433 | 493 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | PRINTS | MADS domain signature | 455 | 470 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | PRINTS | MADS domain signature | 435 | 455 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | PRINTS | MADS domain signature | 470 | 491 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | Coils | Coil | 509 | 543 | - | - | |
Cmu11g1595 | 644 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 442 | 489 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | Gene3D | - | 445 | 530 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu11g1595 | 644 | Pfam | K-box region | 514 | 595 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu11g1595 | 644 | MobiDBLite | consensus disorder prediction | 413 | 436 | - | - | |
Cmu11g1595 | 644 | SMART | madsneu2 | 433 | 492 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g1908 | Cmu-Chr5:28966598 | Cmu11g1595 | Cmu-Chr11:28268144 | 8.70E-34 | dispersed | |
Cmu05g2470 | Cmu-Chr5:33672133 | Cmu11g1595 | Cmu-Chr11:28268144 | 1.90E-14 | dispersed | |
Cmu08g0445 | Cmu-Chr8:14701069 | Cmu11g1595 | Cmu-Chr11:28268144 | 4.70E-27 | dispersed | |
Cmu08g0996 | Cmu-Chr8:22204622 | Cmu11g1595 | Cmu-Chr11:28268144 | 2.70E-26 | dispersed | |
Cmu10g1646 | Cmu-Chr10:17801219 | Cmu11g1595 | Cmu-Chr11:28268144 | 1.90E-30 | dispersed | |
Cmu10g1749 | Cmu-Chr10:21565469 | Cmu11g1595 | Cmu-Chr11:28268144 | 3.70E-20 | dispersed | |
Cmu11g1595 | Cmu-Chr11:28268144 | Cmu07g1575 | Cmu-Chr7:30913945 | 4.10E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7182 | PF01486 | K-box | 6.70E-18 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g1595 | K09264 | - | csv:101222239 | 408.297 |