Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1595 ATGGAATCAAGTATGGAAGCAAGAGATACTGTTGCCGAGAAGTGCCTTGACTTTCATTCAAATGCAAAACGAAAGCGGCATTCTAAACGGTTGAAATCACTTTCAGTAGGCCTAGCAACAATGGAAGACAATGATAATGGAATGTCGCATGAGAAGGAAGGAAATCTTGTTGTAGATAAGTTGTATGTTGGTGAATCTTTCAAGATTCTAGGGATTGGAAGATTGGAAGAAATTTTGTGGTCATCAATCCAAGAATCAAGTATGGAAGCAAGAGATACTGTTGCTAAGAAGTTCCTTGACTCTCATTCAAATGCACAACAAAAGTGGCGTTGTAAACGTTTGAAATCACTTTCAGTAGGCCTAGCAACAATGGAAGATGGTGATAGTGGAATATCGCAGGAGAAGGAAGGAATTCTTGTTGCAGATAAGTTGTGTGTGGACGAATCTCAAGATTTTGGGGGTCCACTCGTGAGAGAGGTAGTACCTGTGACCTTACAAGATTGGAGGAAATTGTCTACAAGATTGAAAGAAATTTTGTGGTCACCAATCCAATTGAGATATAATATGACGGAAGCTTGGCAAAGAGCTTATCTTTTTCAAAAGATGGGTAAGCTATGGAGAGCAGGAAAATCACGGATTGTTTCCAAAATTCAAATGGCTTCTAGTGATGAGGAGCTTGTTAAATTGAAGCCAAACAATATACAATCGATGTACGATTGGATGGACTTTGTGAAAGAAAAGAAAAGTGAAAAATTCAAGGATCGTATTGAAAAATTTGATAATGAAGGGACAAACACTTCTTCAACTAATGTGAACAATAACGCAATAAGTAAAGTTCTTGGTCCTAATCGTGGTCATATTAGAGGACTTGGGTTTGGAGGAAATACAAGTGATCAAATCTCGAATGCTACAAATGAACCTGTGATTAACAATATTGCTATTGACCTTGTTGTATCTTCACCTTTGAGTGTTAACAATAATAATAATGATCTCCGCAAGTGCAAGTTGCTAGATTGGTGCGGTACAGGAAATGTAGATGCTGAAGGTCGATGGTCTTCAAGTGACCCGAAAGTTCTTGTTCATCATGTTTCCCTTGGTCCACAAGCAGTAAAAGTTTGGGTAGACTTGCCAATAAAAGATGATGTATTTTTATGGAGGCCAAACTCAGAAATGACATACATTGAAGATGCAATAGGTAGTACAGCTGCATGGCCGTCTGACAAAGTTCTAATTAAAAATCAAGAACAAGATCAAGATCAAGATCATCAAGAAAGAAAGAAAGAAAGAAATAAAGAAATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTCACATATTCAAAGAGAAGAAATGGGATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGTAGCCCTTCTACACCTTTGATCGACATCTTGGATAAATATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAACATGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACATCTTTGAACTACAAGGAGCTCATGGCGCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTTATGAAAATGATGAGGACAAATGAAAGAATGATGGAAGAAGAGAACAAACGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAAATGGATAATGGATATAATCAAAGAATGAGAGACTTCAATTCTCAGATGCCCTTTGCCTTCAGAGTTCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 1935 38.14 MESSMEARDTVAEKCLDFHSNAKRKRHSKRLKSLSVGLATMEDNDNGMSHEKEGNLVVDKLYVGESFKILGIGRLEEILWSSIQESSMEARDTVAKKFLDSHSNAQQKWRCKRLKSLSVGLATMEDGDSGISQEKEGILVADKLCVDESQDFGGPLVREVVPVTLQDWRKLSTRLKEILWSPIQLRYNMTEAWQRAYLFQKMGKLWRAGKSRIVSKIQMASSDEELVKLKPNNIQSMYDWMDFVKEKKSEKFKDRIEKFDNEGTNTSSTNVNNNAISKVLGPNRGHIRGLGFGGNTSDQISNATNEPVINNIAIDLVVSSPLSVNNNNNDLRKCKLLDWCGTGNVDAEGRWSSSDPKVLVHHVSLGPQAVKVWVDLPIKDDVFLWRPNSEMTYIEDAIGSTAAWPSDKVLIKNQEQDQDQDHQERKKERNKEMGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28268144 28281179 + CmPI595203_11g015950.1 Cmu11g1595 430117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1595 644 CDD MADS_MEF2_like 434 512 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu11g1595 644 SUPERFAMILY SRF-like 434 528 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 ProSiteProfiles K-box domain profile. 516 602 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu11g1595 644 ProSitePatterns MADS-box domain signature. 435 489 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 PANTHER SERUM RESPONSE FACTOR HOMOLOG 433 611 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu11g1595 644 ProSiteProfiles MADS-box domain profile. 433 493 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 PRINTS MADS domain signature 455 470 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 PRINTS MADS domain signature 435 455 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 PRINTS MADS domain signature 470 491 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 Coils Coil 509 543 - -
Cmu11g1595 644 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 442 489 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 Gene3D - 445 530 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu11g1595 644 Pfam K-box region 514 595 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu11g1595 644 MobiDBLite consensus disorder prediction 413 436 - -
Cmu11g1595 644 SMART madsneu2 433 492 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1908 Cmu-Chr5:28966598 Cmu11g1595 Cmu-Chr11:28268144 8.70E-34 dispersed
Cmu05g2470 Cmu-Chr5:33672133 Cmu11g1595 Cmu-Chr11:28268144 1.90E-14 dispersed
Cmu08g0445 Cmu-Chr8:14701069 Cmu11g1595 Cmu-Chr11:28268144 4.70E-27 dispersed
Cmu08g0996 Cmu-Chr8:22204622 Cmu11g1595 Cmu-Chr11:28268144 2.70E-26 dispersed
Cmu10g1646 Cmu-Chr10:17801219 Cmu11g1595 Cmu-Chr11:28268144 1.90E-30 dispersed
Cmu10g1749 Cmu-Chr10:21565469 Cmu11g1595 Cmu-Chr11:28268144 3.70E-20 dispersed
Cmu11g1595 Cmu-Chr11:28268144 Cmu07g1575 Cmu-Chr7:30913945 4.10E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7182 PF01486 K-box 6.70E-18 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1595 K09264 - csv:101222239 408.297