Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1598 ATGGCGGCAGCGGTCGGAGGAGGTAGTGGTAACGTCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTGCAAGTAATCAATGGAGGTTATCATGTTATAACCAAAGTCGCCCTCAATGTTGGAATGAACCAGCTCGTTTTTTGTTTGTTCCGCGACTTGTTGGCTCTCGCGATTCTTTCCCCTGTCGCCTATGTTCGGGAGAAGCGGATTCGTTTGCCCATGACTCGAGACCTCCTCATATCGTTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTCGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGACTGTAAACTTACTCAAACTGGAAGGACAGGCAAAGGTTGGAGGTACCCTCGTTTGTGTCTCTGGTGCCATATTGATGGTTTTATTCCGTGGTCCAGCTTTGGTTGGAAGCACTGAATCTGATTTCATGTCACATAGCGAAATAAGTGCAAGGGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAGTATGGATTGGATCATTTTCATGTTGGGGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGAGTGTTAAAGAAGTATCCTGCTAACTTATCGGTCACAGCATATTCTTATTTATTTGGTGCTATATTGATGGTGATCACATCCTTCTTTATGACCAACGAATCCACAGACTGGAATTTGACGCAATCAGAGTTTTTTGCTGTCCTTTATGCCGGAGTTTTTGCATCTGCGATCAACTATGGACTCTTGACATGGTGCAATAAAATATTAGGACCTGCATTGGTCGCTCTTTACAATCCACTTCAACCTGCAGCATCTGCGCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGATCTCTTATAATTGCTGGTCTTTATTTGGTTACATGGGCGTCACATAGGGAACGACAAACGACTCCGGTTTTGCTACCGCATTCAACCAGGTCCTCCGAACCACTTATTCATAAAGATGCATTGACTAACAAGTTTGCATATCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTGTCTTTAATGTTCTTCAACTGGATGGTTTCTGGGTTTCCGGCCTGAGGGCTTTTAGCTTAATCTTTTCCTGCAGATCCGGCGTGATTTCTTAA 1281 44.96 MAAAVGGGSGNVGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILSPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNLLKLEGQAKVGGTLVCVSGAILMVLFRGPALVGSTESDFMSHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYLFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSVLGGSLIIAGLYLVTWASHRERQTTPVLLPHSTRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSVFNVLQLDGFWVSGLRAFSLIFSCRSGVIS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28284051 28291448 - CmPI595203_11g015980.1 Cmu11g1598 430120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1598 426 PANTHER WAT1-RELATED PROTEIN 22 359 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu11g1598 426 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 163 - -
Cmu11g1598 426 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 351 - -
Cmu11g1598 426 Pfam EamA-like transporter family 209 345 IPR000620 GO:0016020(InterPro)
Cmu11g1598 426 Pfam EamA-like transporter family 22 143 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1565 Cmu-Chr11:27922639 Cmu11g1598 Cmu-Chr11:28284051 2.80E-36 dispersed
Cmu11g1598 Cmu-Chr11:28284051 Cmu08g1406 Cmu-Chr8:26226469 2.90E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1598 - - - 0.0