Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1620 ATGAAGTTCATTCCTCTGGAAAATCGAGTGTCATTTTTCTTGCAGCAGCTCGTTGTTACCAGATTACTATATGTTCAAGAAAGCCATTCCTGTATTTGGTATCTCAGATGGTTTGTTGTAATTGTATTATGCTTGACTGGTGTCACCATGGGCTTCTGTACCGTAAAATGGCAATGGCTACTGATTCTTCACATTGTGCCGCTTTGTATGTTAATGAGCAGAAGCAGGGGTATCAGTTCTGATGGCGAGGCACTCTTGAGCTTCAGAGCATCAATTATTGATTCTGATGGTGTTCTTCTTCAATGGAAGCCAGAGGAACCCCATCCTTGTAAATGGAAAGGAATAACATGTGATCCAAAAACCAAGAGAGTGATATATTTGAGTCTTCCTTATCACAAACTTAGTGGATCGCTATCCCCCGAACTTGGAAAGCTTGACCACCTAAAAATTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTCCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTAGGGAATCTTTCGGCACTTAGAAACTTAGACATTTCAAGTAACTCACTCGGTGGAAATATTCCCATCTCGCTCGGGAAGTTGAGCAAGCTTATTAGTTTAAACGTGTCTGCCAATTTTCTGGTTGGATCAATTCCAAATGTTGGCGTGCTACTCGACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTTATGTGCAAAGATGACAAAAAGGGACCTGAAACTAATGAGTCACCATTCTCAGTGGAAAATCAAATTGGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGGTCTAGTGCTGGATGGTTGTGGAGGTGCTCGTGCTGCGGGTGTAATGTTTCATGGAGACTTGCCATACGTATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATTGTAAAATTGAATGAGGGCTTTGATCGTTTTTTTGAGAGAGAGCTCGAAATTCTTGGAAGCATTAAGCACAGGTTTCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTACACGGCCTCCGTACTGAATTGTCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCCCCGCGGATAATTCACCGAGACATAAAATCAAGCAACATTTTACTTGACGCTAATTTGGAGGCTCGAGTTTCTGACTTTGGACTTGCGAAACTTTTAGAGGATGAAGAATCGCACATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGTCCCACAGATGCTTCATTCATTGAGAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTAGTCACAGAGAATCGACAACGAGAAATAGCTGACTTACAGTGCGAGGGCATGCAAGCAGAGAGCTTGGATGCATTGCTATCGGTTGCCATCCAATGTGTTTCGTCGAATGCAGAGGATCGACCAACCATGCATAGGGTAGTCCAGATATTGGAATCTGAGATTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 1944 41.92 MKFIPLENRVSFFLQQLVVTRLLYVQESHSCIWYLRWFVVIVLCLTGVTMGFCTVKWQWLLILHIVPLCMLMSRSRGISSDGEALLSFRASIIDSDGVLLQWKPEEPHPCKWKGITCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALRNLDISSNSLGGNIPISLGKLSKLISLNVSANFLVGSIPNVGVLLDFSESSFLGNRGLCGKQINVMCKDDKKGPETNESPFSVENQIGKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDGCGGARAAGVMFHGDLPYVSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGLRTELSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIADLQCEGMQAESLDALLSVAIQCVSSNAEDRPTMHRVVQILESEIMTPCPSDFYDTD 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28478157 28486495 - CmPI595203_11g016200.1 Cmu11g1620 430142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1620 647 Gene3D Phosphorylase Kinase; domain 1 338 435 - -
Cmu11g1620 647 Gene3D Ribonuclease Inhibitor 78 265 IPR032675 -
Cmu11g1620 647 ProSiteProfiles Protein kinase domain profile. 360 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1620 647 Pfam Leucine rich repeat N-terminal domain 79 118 IPR013210 -
Cmu11g1620 647 Gene3D Transferase(Phosphotransferase) domain 1 436 638 - -
Cmu11g1620 647 Pfam Protein kinase domain 362 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1620 647 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515(InterPro)
Cmu11g1620 647 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Cmu11g1620 647 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
Cmu11g1620 647 SMART serkin_6 360 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1620 647 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 436 642 - -
Cmu11g1620 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1620 647 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 333 435 - -
Cmu11g1620 647 SUPERFAMILY L domain-like 79 242 - -
Cmu11g1620 647 SUPERFAMILY Protein kinase-like (PK-like) 348 631 IPR011009 -
Cmu11g1620 647 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 239 633 IPR050647 -
Cmu11g1620 647 ProSitePatterns Protein kinases ATP-binding region signature. 366 392 IPR017441 GO:0005524(InterPro)
Cmu11g1620 647 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 78 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1690 Cmu-Chr6:27950540 Cmu11g1620 Cmu-Chr11:28478157 9.80E-90 dispersed
Cmu07g1116 Cmu-Chr7:26195527 Cmu11g1620 Cmu-Chr11:28478157 1.20E-227 dispersed
Cmu11g1620 Cmu-Chr11:28478157 Cmu11g1709 Cmu-Chr11:29264261 1.60E-82 dispersed
Cmu11g1620 Cmu-Chr11:28478157 Cmu01g1403 Cmu-Chr1:27552775 1.90E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75952 PF00069 Pkinase 1.10E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1620 - - - 0.0