Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1622 ATGCTAATTTTAGTTGGAAATATGCAAGGAACAGGAACAATGGCGTCTGTGGCTTCCTTGTTCAATTTGGGAGGTGTTGGAATGGTAGGATCATTAGAGAAGCCTCGTTCACAGTTTCGTGGAGTTTGTTTATCGAGAAGAGGTTTTAATGGAAGTAATAGATGGTATTATGTATCATTTCCTCTTTGTAAATATTCAGCAACAACAACTGATTTTGTTGCCGACCAAGGCAATGCCATCTCTGTTGATTCTAATTCTTATAGAAGAAGTAAAGAAGACGACAACACTGATTTTCTTCTGAAGCCAGCTCCCAAGCCAGTATTGAAAGCTGCAGAGTCTAAGCCCCTTGTAGGTTTGAATAAAGTAACATGGGAATCACCGAGAACTAATGGGGATTCTAACAGTAACAGCAAATTGTTGGATGATGAAGAAGAAAGGAGCAAGGTGATTGAGTCTCTTGGAGAGGTATTGGAAAAGGCCGAAAAGCTAGAGACTCCGAAGTTGGGTAATAAGAGACCAGGAAGAGGTGTAGACAAGCCAACAACATCAAGCTCAAGCTCTACTTCGAAGCCAGTAAACTCGATGGCGAATCGAAAATCTAAAACTTTGAAAAGTGTTTGGCGCAAGGGAGATACAGTTGCATCGGTGCAGAAGATTGTAGCAGAGCCATCTAAGCCTAATGGGGAAGTTGAAGCTAAACCAGGGGGAGCTAGCAAGGTAGAGCCTCAATCACGTGCTGCTTTTCGACCCCCTCAACCACCTGTGAAACCACAACCAAAATTACAAGAAAAGCCTTTGGCTGCACCCCGACCTACATTAAAGAAACCAGTTGTCTTGAAGGATGTGGGGGCAGCAACTGTGACAGCAGATGATGAAACTAATACAGCAGCAAAGACAAAAGAGAGAAAGCCGATTCTGATTGACAAATATGCTTCAAAGAAACCTGTAGTTGATCCTTTTATTTCTGACGCTGTATTGGCCCCAACAAAACCTGGAAAAGCCCCTCCTCCTGGAAAGTTCAAGGACGATTACCGCAAGAAGAGTGTTGCATCAGGAGGTCCACGAAGGAGAATGGTCAATAACGATAAAGATGATGTTGAAATCCCTGATGATGTTTCCATTCCTAGTGTGACTACAGCACGAAAAGGAAGGAAATGGAGCAAGGCGAGCCGGAAGGCAGCAAGAATCCAGGCTTCCAAAGATGCTGCCCCTGTGAAAGTTGAAATTCTAGAAGTTGAAGAAAGTGGTATGTTGCTTGAGGAATTGGCATACAATTTGGCCATCAGTGAAGGTGAAATTCTTGGGTATTTATATTCAAAGGGGATTAAGCCTGATGGCGTGCAAACTTTAGATAAAGATATAGTGAAGATGATCTGCAAAGAGTATGATGTGGAGACCATAGACGTTGATCCGGTTAAAGTTGAAGAGTTCGCTAAAAAGAGGGATATTTTTGATGAAGAAGATCTGGATAAACTTCAAAGCAGGCCTCCAGTCATCACCATTATGGGACATGTTGACCATGGCAAGACTACACTTTTGGACTACATCCGCAGGAGCAAGGTAGCTGCATCAGAAGCTGGTGGGATTACTCAAGGAATTGGTGCTTATAGGGTGTTGGTACCACTTGATGGCAAGTTGCAGCCATGCGTGTTCCTTGATACTCCGGGGCATGAGGCGTTTGGAGCCATGAGAGCTCGTGGTGCTCGGGTGACAGACATTGCCATCATTGTGGTGGCTGCTGATGATGGAATCCGGCCTCAGACAAATGAGGCTATAGCTCATGCCAGAGCAGCTGGAGTACCAATAATTGACAAAGATGGTGCTAATGCAGATAGAGTGATGCAAGAACTTTCCTCTATCGGTCTAATGCCAGAGGACTGGGGCGGTGACATCCCCATGGTGCAGATTAGTGCTCTGAAAGGGCTGAATGTGGATGACCTGTTGGAAACAGTAATGCTTCTTGCTGAGTTGCAAGAATTGAAGGCTAATCCCGATAGAAGTGCAAAAGGGACCGTCATTGAGGCAGGTCTTGACAAATCAAAAGGACCATTTGCTACGTTTATTGTACAGAATGGAACCCTTAAAAGGGGAGACGTTGTAGTATGTGGGGAGGCCTTTGGGAAGGTTAGAGCTTTATTTGATGATGGCGGGAAACGAGTCGACGAAGTTGGACCTTCTTTACCAGTACAGGTCATTGGGTTAAATATTGTGCCAATTGCCGGTGATGTATTCGAGGTTGTTGATTCCCTTGATACTGCTCGTGAAAAGGCAGAGTTACGTGCCGAGGCCTTGCGGTCACAACGAATATCAGATAAGGCTGGAGATGGGAAGGTTACCCTTTCTTCTTTAGCTTCAGCAGTGTCATCAGGAAAGCAGGCTGGGTTAGACTTGCACCAACTGAACATAATTATGAAGGTCGATGTTCAGGGATCAATTGAGGCTATTAGACAAGCCCTTCAGGTGCTCCCGCGAGAAAATGTCTCTTTGAAGTTTCTTTTGCAAGCAACTGGCGATGTGAGCTCCAGTGATATTGATCTTGCAGTTGCAAGCAAAGCCATAATTTTAGGATTTAATGTTAAAGCACCAGGTTCTGTCAAAAGTTATGCGGAAAATAAAGGTGTCGAGATTAGGCTCTATAGAGTCATCTACGAGCTTATTGATGATGTGCGGAATGCAATGGAAGGACTCCTAGAACCTGTAGAGGAAAAAGTACCAATAGGGTCGGCAGAAGTCCGTGCAGTATTCAGTAGTGGCAGTGGTCTTGTTGCTGGATGCATGGTAGTAGAAGGAAAGCTGGTAAAGGGCTGTGGCATTCAAGTTCTGCGGAAGGGTAAAACGGTGTATAATGGTCAACTTGATTCACTGCGACGAGTCAAAGAAATCGTGAAAGAGGTAAATGCTGGCTTAGAGTGTGGAGTTGGAATGGAGGATTACAATGATTGGGAGGTGGGGGATGTAATAGAGGCCTTTGACACCATTATGAAGAAGCGGACGCTAGAAGAGGCCTCGGCTTCAATGACAGCTGCACTGGAGGAAGCTGGAATTGACTTGTAG 3054 44.79 MLILVGNMQGTGTMASVASLFNLGGVGMVGSLEKPRSQFRGVCLSRRGFNGSNRWYYVSFPLCKYSATTTDFVADQGNAISVDSNSYRRSKEDDNTDFLLKPAPKPVLKAAESKPLVGLNKVTWESPRTNGDSNSNSKLLDDEEERSKVIESLGEVLEKAEKLETPKLGNKRPGRGVDKPTTSSSSSTSKPVNSMANRKSKTLKSVWRKGDTVASVQKIVAEPSKPNGEVEAKPGGASKVEPQSRAAFRPPQPPVKPQPKLQEKPLAAPRPTLKKPVVLKDVGAATVTADDETNTAAKTKERKPILIDKYASKKPVVDPFISDAVLAPTKPGKAPPPGKFKDDYRKKSVASGGPRRRMVNNDKDDVEIPDDVSIPSVTTARKGRKWSKASRKAARIQASKDAAPVKVEILEVEESGMLLEELAYNLAISEGEILGYLYSKGIKPDGVQTLDKDIVKMICKEYDVETIDVDPVKVEEFAKKRDIFDEEDLDKLQSRPPVITIMGHVDHGKTTLLDYIRRSKVAASEAGGITQGIGAYRVLVPLDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHARAAGVPIIDKDGANADRVMQELSSIGLMPEDWGGDIPMVQISALKGLNVDDLLETVMLLAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGEAFGKVRALFDDGGKRVDEVGPSLPVQVIGLNIVPIAGDVFEVVDSLDTAREKAELRAEALRSQRISDKAGDGKVTLSSLASAVSSGKQAGLDLHQLNIIMKVDVQGSIEAIRQALQVLPRENVSLKFLLQATGDVSSSDIDLAVASKAIILGFNVKAPGSVKSYAENKGVEIRLYRVIYELIDDVRNAMEGLLEPVEEKVPIGSAEVRAVFSSGSGLVAGCMVVEGKLVKGCGIQVLRKGKTVYNGQLDSLRRVKEIVKEVNAGLECGVGMEDYNDWEVGDVIEAFDTIMKKRTLEEASASMTAALEEAGIDL 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28493685 28500707 + CmPI595203_11g016220.1 Cmu11g1622 430144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1622 1017 PRINTS GTP-binding elongation factor signature 566 577 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu11g1622 1017 PRINTS GTP-binding elongation factor signature 498 511 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu11g1622 1017 PRINTS GTP-binding elongation factor signature 550 560 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu11g1622 1017 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 250 1001 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(PANTHER)
Cmu11g1622 1017 CDD mtIF2_IVc 907 989 - -
Cmu11g1622 1017 MobiDBLite consensus disorder prediction 336 350 - -
Cmu11g1622 1017 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 795 907 IPR036925 -
Cmu11g1622 1017 Coils Coil 747 767 - -
Cmu11g1622 1017 MobiDBLite consensus disorder prediction 123 145 - -
Cmu11g1622 1017 FunFam Translation initiation factor IF-2 796 901 - -
Cmu11g1622 1017 NCBIfam small GTP-binding protein domain 496 651 IPR005225 GO:0005525(InterPro)
Cmu11g1622 1017 Pfam Elongation factor G domain 2 668 746 IPR053905 -
Cmu11g1622 1017 FunFam Translation initiation factor IF-2 664 782 - -
Cmu11g1622 1017 ProSitePatterns Initiation factor 2 signature. 950 972 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cmu11g1622 1017 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 494 661 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu11g1622 1017 Pfam Elongation factor Tu GTP binding domain 499 653 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu11g1622 1017 MobiDBLite consensus disorder prediction 326 367 - -
Cmu11g1622 1017 CDD IF2_eIF5B 497 657 - -
Cmu11g1622 1017 Gene3D Translation factors 664 779 - -
Cmu11g1622 1017 Gene3D - 491 663 IPR027417 -
Cmu11g1622 1017 SUPERFAMILY Translation proteins 664 747 IPR009000 -
Cmu11g1622 1017 MobiDBLite consensus disorder prediction 177 201 - -
Cmu11g1622 1017 Hamap Translation initiation factor IF-2 [infB]. 7 997 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cmu11g1622 1017 Gene3D - 796 901 IPR036925 -
Cmu11g1622 1017 FunFam Translation initiation factor IF-2 491 663 - -
Cmu11g1622 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 664 IPR027417 -
Cmu11g1622 1017 CDD IF2_mtIF2_II 668 762 IPR044145 -
Cmu11g1622 1017 Pfam Translation initiation factor IF-2, N-terminal region 419 465 IPR006847 -
Cmu11g1622 1017 FunFam Translation initiation factor IF-2 901 998 - -
Cmu11g1622 1017 SUPERFAMILY Translation proteins 903 997 IPR009000 -
Cmu11g1622 1017 Gene3D Translation factors 902 998 - -
Cmu11g1622 1017 MobiDBLite consensus disorder prediction 161 277 - -
Cmu11g1622 1017 NCBIfam translation initiation factor IF-2 417 999 IPR000178 GO:0003743(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006413(InterPro)
Cmu11g1622 1017 Pfam Translation-initiation factor 2 795 889 IPR023115 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1622 K02519 - - csv:101216442 1816.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1466 Cmu-Chr7:29792588 Cmu11g1622 Cmu-Chr11:28493685 2.40E-104 dispersed
Cmu09g0923 Cmu-Chr9:9180977 Cmu11g1622 Cmu-Chr11:28493685 5.00E-23 dispersed
Cmu11g1622 Cmu-Chr11:28493685 Cmu09g1020 Cmu-Chr9:10279100 8.30E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004219 3 2 2 2 2 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 1 41