Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1625 ATGGATTTCGTTTCGAATTCACTGGCTTGCAAGACTCTCCCTTGCCGGACTCTGTTTCCGCCGTGCGCAACATCTTCTCGCCGCCGCCAATGGTTGCCTTCTTCACTCTTCAATGCAGGCAAGCGAGTCAGAGAGCTTCGCTGCGAGTTCGAAGTGAACGTTAATGGCGCTCTTTCCAGCGACTTCGACCCTCGTTCCGTTGACAGGGTTGCTTTACTAGCAGTTATTAGTTTCTCAGATATTGCAATTTTTGTGTCATCCCAGAAAAAAGCATTGGAGGCAGCAATGAATGAAATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGACTTGGAAGTGCTGGTGGAGCATTAGTGGAAACTTTCCCAAGTGGCTGTTTGACTTTAGATTGTGCCTTAGGTGGTGGCCTTCCTAAAGGCAGAATTGTCGAGATATTTGGACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGCAATTGCAGAAGTACAGAAACTAGGAGGAAATGCGATGCTTGTAGATGCAGAGCATGCCTTTGATCCAGCATATTCTAAAGCTGTAGGAGTGGATGTAGAAAATTTAATTGTATGCCAACCTGATCATGGAGAGATGGCACTTGAGATTGCAGATCGCATGTGTAGATCTGGTGCTGTAGATCTCATTTGTGTTGATTCTGTCTCTGCTCTTACACCAAGAGCAGAAATCGAAGGTGAGATCGGTATGCAGCAAATGGGTTTGCAAGCACGCCTCATGAGTCAAGCTCTTCGTAAAATGTCTGGAAATGCCTCAAAAGCTGGTTGTACTCTCATATTTTTGAATCAAATACGATATAAGATTGGTGTGTATTATGGAAATCCAGAAGTGACGAGTGGAGGGATTGCACTGAAGTTCTTTGCCTCACTTCGACTTGAAATACGTCCTATTGGGAAGCTAAAGTCTGCTAAAGGAGATGAAGAAATTGGGATTCGAGTTCGTGTTAGAGTCCAAAAGAGCAAGATAGAAAAGTATCAAGGAAGAGGCAACAGAGGCGAGAGTCCCATGAAGAGATCGCTGACAATTGTGGATTCGGAGGTGGGAGATGAAAGCCTAGAAGAGGAGTTGGCAGATGGTCGTGAGAAAAATGGAAATAGAAAAAGAGAAGTACCGGATGGAGCAGTCCGCACCCATCAATGTGCTGAGTATAAGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAGGTAAACTGGGTTGCATTTTAGATTGTGCTGAAATTATGGACATTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGATCACAGGTTGGGGCAAGGAAGAGACAGAGCTCTGCAATACTTAAAAGATAATCCTGCTCTTCAAGATGAAATTGAGAAGGCTGTGCAGACCATGCTGACAAGTGGAACTGTTCAAATGGGATTTCAATCTATTAGAAAGCCATTGCCGAACCAAGAAGAGGCGCGAGCTAGATGTGATGAAGACAGTAAGAACTGGCTTCTTTGCTTCCGATCTCTGAAGACAACGTTTTGGATCATCCTTGAAATCATTGAAGTCCTTCGGTCTCGCTAA 1593 44.51 MDFVSNSLACKTLPCRTLFPPCATSSRRRQWLPSSLFNAGKRVRELRCEFEVNVNGALSSDFDPRSVDRVALLAVISFSDIAIFVSSQKKALEAAMNEINSSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKLKSAKGDEEIGIRVRVRVQKSKIEKYQGRGNRGESPMKRSLTIVDSEVGDESLEEELADGREKNGNRKREVPDGAVRTHQCAEYKVSRPYKQAEFEIIFGEGVGKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKAVQTMLTSGTVQMGFQSIRKPLPNQEEARARCDEDSKNWLLCFRSLKTTFWIILEIIEVLRSR 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28511891 28518128 - CmPI595203_11g016250.1 Cmu11g1625 430147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1625 530 SMART AAA_5 139 310 IPR003593 GO:0016887(InterPro)
Cmu11g1625 530 PRINTS RecA protein signature 175 204 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 PRINTS RecA protein signature 444 461 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 PRINTS RecA protein signature 292 320 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 PRINTS RecA protein signature 390 419 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 PRINTS RecA protein signature 209 238 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 PRINTS RecA protein signature 247 276 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 CDD RecA 119 416 - -
Cmu11g1625 530 NCBIfam recombinase RecA 88 334 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 PANTHER RECA 85 484 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 Pfam recA bacterial DNA recombination protein 90 334 IPR049428 -
Cmu11g1625 530 SUPERFAMILY RecA protein, C-terminal domain 416 471 IPR023400 -
Cmu11g1625 530 Gene3D - 117 341 IPR027417 -
Cmu11g1625 530 ProSiteProfiles RecA family profile 2. 281 419 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Cmu11g1625 530 ProSiteProfiles RecA family profile 1. 118 276 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Cmu11g1625 530 Pfam RecA C-terminal domain 418 471 IPR049261 -
Cmu11g1625 530 Hamap Protein RecA [recA]. 88 476 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Cmu11g1625 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 334 IPR027417 -
Cmu11g1625 530 Gene3D - 415 472 - -
Cmu11g1625 530 ProSitePatterns recA signature. 295 303 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1625 K03553 - - csv:101216994 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0459 Cmu-Chr4:15386087 Cmu11g1625 Cmu-Chr11:28511891 4.40E-39 dispersed
Cmu11g1625 Cmu-Chr11:28511891 Cmu11g0170 Cmu-Chr11:2144983 1.00E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g966 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01587 Cam11g1654 Cec11g1682 Cco11g1679 Clacu11g1811 Cmu11g1625 Cre11g2041 Cone6ag0287 Cone9ag0322 . . Lsi04g01865 . . Cme07g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009642 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 1 1 2 1 1 31