Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1637 ATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCGCCGTCGGGGTCGGGTTCCTCCTCACGTTCCCGCTCATTCTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCGCGCTCCAGGTCTGCCTCTGTCTCCCGCTCCCGTTCTCGTTCCAGGTCCATTTCCTCGTCTTCGTCTCTCTCTCGCAGCGGTAGTTCTCGGAGCCGAAGCCCCCCTCCTCAGAGAAAGAGTCCGACTGAAACAGCTCGGCGGACTCGCGCTTCATCTCCACCAGCTAAACGAAGTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGACGCACTGAGTAGGAATGTCCACGAGGGTCATTTAAGAGAAATCTTCGGTAATTTTGGTGAAGTGGTCAATGTTGAGCTTGCAATGGATCGCACAGTCAACCTTCCTAAAGGATACGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAGATGCCAACACCTCCAAGGACTGTAGCAACCGTTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTCCTGATGCTGACAAGGATGACATGAAAAGACAGAGAGATCCCTCTCCTCGTCGAAAACCTCTTTCACCTAGAAGGCGCTCGCCTGTTGGTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCACGCCGTCGTCCGGAGTCTCCCCCACGTCGCCGTGTAGAATCTCCTTTTCGTCGCGATTCTCCTCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCCCCATCGCCTTTGGCAAGACGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGTCCTGTTCGAAGACGTTCACCACCACCTCCTAGGCGCCGAACACCACCTCGGCGTGCTCGTAGTCCTCCCAGAAGGTCTCCTGTAGTTCGTAGACGAAGCCGTTCACCTATTAGAAGACCAGCTCGATCACGTTCCCGATCATTTTCACCACGGAGAGGTCGGCCGGCAGCTGCTGGTAGACGTGGGAGATCATCATCCTACTCTGGGTCACCTAGTCCACGCAAGGTGGCCAGGAGGGTATCTCGCAGTCCAAGAAGGCCTTTGAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCTTGCAGTCAAGAACACAACGCAAACGACTCGCTCCAGCGACTTAGGAAGGAACTCTCGTCATATACAGAATGAACAGAGTTGCTTAAATTGA 1338 53.74 MAKPSRGRRSPPSGSGSSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSSRSRSPPPQRKSPTETARRTRASSPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGHLREIFGNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDADKDDMKRQRDPSPRRKPLSPRRRSPVGRRGGSPRRQPDSPRRRPESPPRRRVESPFRRDSPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSFSPRRGRPAAAGRRGRSSSYSGSPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPPLAVKNTTQTTRSSDLGRNSRHIQNEQSCLN 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28638285 28648130 + CmPI595203_11g016370.1 Cmu11g1637 430159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1637 445 SUPERFAMILY RNA-binding domain, RBD 92 200 IPR035979 GO:0003676(InterPro)
Cmu11g1637 445 Gene3D - 8 191 IPR012677 -
Cmu11g1637 445 MobiDBLite consensus disorder prediction 183 445 - -
Cmu11g1637 445 CDD RRM_RNPS1 109 181 IPR034201 -
Cmu11g1637 445 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 305 - GO:0000398(PANTHER)|GO:0005654(PANTHER)|GO:0005737(PANTHER)|GO:0061574(PANTHER)
Cmu11g1637 445 MobiDBLite consensus disorder prediction 249 280 - -
Cmu11g1637 445 MobiDBLite consensus disorder prediction 207 232 - -
Cmu11g1637 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723(InterPro)
Cmu11g1637 445 MobiDBLite consensus disorder prediction 402 445 - -
Cmu11g1637 445 MobiDBLite consensus disorder prediction 300 361 - -
Cmu11g1637 445 SMART rrm1_1 108 181 IPR000504 GO:0003723(InterPro)
Cmu11g1637 445 MobiDBLite consensus disorder prediction 10 89 - -
Cmu11g1637 445 MobiDBLite consensus disorder prediction 1 104 - -
Cmu11g1637 445 FunFam Serine/arginine-rich splicing factor SR45 3 192 - -
Cmu11g1637 445 Pfam RNA recognition motif 111 179 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1637 K14325 - - csv:101216970 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1910 Cmu-Chr3:26364897 Cmu11g1637 Cmu-Chr11:28638285 1.60E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .