Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1660 ATGATCCCTTTCAAGCAAGCATCCATTGATGTCAGCTCCTCAATTTCTCCGGTAAGATTCGATTATTGTATGTGCTCGGCTGGTCTCGGAAATTCAATGCAGCAAGTGAAAGCTTTGACCCGCAAATTGAGCACAAAAGAGGAATTGAAGAAAGTAAAACTTATGACGTCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGTGAATCCGATGAAGGAAAAGTTGTTCGAGAAGTCTGTGCAAATGGGGTCTGCATTAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCGTCACTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGCATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCGTTACTGAGAAGATGCCTCCAAAAAAAGGACGTGCTCGCTCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTTGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAATAATGAAACCTGTGCTAGGATCCAGAAAGGATTTGCTGTATTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGTAGTCAGACATCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTATCTCTTTGTTATTTTGCAGCAGGTCAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCGGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAACAATTCCATAGAAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGTTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGGCTTCCTCTGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACTGGTGGTTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCTGAAGTGGTTACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAGGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTATCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTGTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAGAGAGCTGAAGGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTACATTAATGCTCTCCTACTCGAACCGTCTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCAGATGCATTGCCTATAGCGAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCTACCAACCGTAAGGCTTGGTTTTACTTAGGGGTCATTCATAGGGATGAAGGACGAATGGCTGATGCCATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2289 43.08 MIPFKQASIDVSSSISPVRFDYCMCSAGLGNSMQQVKALTRKLSTKEELKKVKLMTSTVDEDDREPAMESGESDEGKVVREVCANGVCIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCVTEKMPPKKGRARSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNETCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLSLCYFAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMNNSIENEEHLKGVGLRLLGLCLGKQAKMASSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPSYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28846350 28851642 - CmPI595203_11g016600.1 Cmu11g1660 430182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1660 762 FunFam NPG1 607 756 - -
Cmu11g1660 762 Gene3D Tetratricopeptide repeat domain 565 755 IPR011990 GO:0005515(InterPro)
Cmu11g1660 762 SUPERFAMILY TPR-like 244 519 IPR011990 GO:0005515(InterPro)
Cmu11g1660 762 Gene3D Tetratricopeptide repeat domain 368 561 IPR011990 GO:0005515(InterPro)
Cmu11g1660 762 ProSiteProfiles TPR repeat profile. 720 753 IPR019734 GO:0005515(InterPro)
Cmu11g1660 762 PANTHER PROTEIN NPG1 47 760 IPR043376 -
Cmu11g1660 762 Gene3D Tetratricopeptide repeat domain 93 317 IPR011990 GO:0005515(InterPro)
Cmu11g1660 762 SMART tpr_5 720 753 IPR019734 GO:0005515(InterPro)
Cmu11g1660 762 SMART tpr_5 650 683 IPR019734 GO:0005515(InterPro)
Cmu11g1660 762 SMART tpr_5 526 559 IPR019734 GO:0005515(InterPro)
Cmu11g1660 762 SMART tpr_5 616 649 IPR019734 GO:0005515(InterPro)
Cmu11g1660 762 SMART tpr_5 370 403 IPR019734 GO:0005515(InterPro)
Cmu11g1660 762 Pfam Tetratricopeptide repeat 93 145 - -
Cmu11g1660 762 Pfam Tetratricopeptide repeat 704 747 - -
Cmu11g1660 762 SUPERFAMILY TPR-like 490 751 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0440 Cmu-Chr5:3677530 Cmu11g1660 Cmu-Chr11:28846350 4.00E-159 dispersed
Cmu08g1591 Cmu-Chr8:27598842 Cmu11g1660 Cmu-Chr11:28846350 2.80E-149 dispersed
Cmu11g1660 Cmu-Chr11:28846350 Cmu07g0178 Cmu-Chr7:1748365 2.30E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1660 K21843 - csv:101206641 1339.71