Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1726 ATGTTAGAAGGTAGATCTACGATCATTGTTGCTTCCCTTGTTGTTTCTTTGATTATAAGCTTTGCATTTGGATTTGATCCCTTGTTGCCTCTTGATGAGGTGGAAGGTTTAAAGTATGTGGCAGAGACATTGGGAAAGAGAGATTGGAATATTACTACAAATTCATGCATGGAGGAAGGGTCGATTATGGAGTGCAATTGCACATACATCAATCATACCGTCTGCCACATTACAACAATAACTTTGACGTCGCAGAATTTGGAAGGGACGCTTCCATCTCAACTCTTTAGGCTGCCCTACCTCGAGGCCCTTGACCTGGCTCGAAATCGATTGACGGGTTCCATTCCAGAAGAGATCGGAAACATCACCACTCTTCAATTTTTGAACTTAGAAGTCAATCGTCTATCAGGAAGCTTACCTTCAACACTTGGAAATTTGGTGAACCTGCAAACATTACGTCTTGCCTCGAATAACTTTACTGGAAAGCTGCCGGCATCTCTGGGAATGCTAACCTCATTGACCTCAATTCAAATCAGTGACAATAACTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGATAAGTGTTACGAGAATAGAGGCTCACGCAAGTGGATTGAGTGGCCCTCTTCCTTCTGAAATTGGCCTTTTGACCAAATTAACTGACCTAAGAATCAGTGACTTGAATGGGGATTCTTCGTCACCCTTTCCACCTCTTCAGAATTTGACCAGTATCATATATCTAGACCTCAGCTTTAACAAAATAAGTGGGCAGATTCCTCCCAACTTTCAGGATCTTGAAGATGTAGACTACATATTTTTAACTGGAAACTTGCTAAATGGTTCACTGCCTAATTGGATGTTAGAGAAAGGACACAACATTGATCTCTCTTACAATAAATTTGAACAACTATCTAATGGCTGTCAATCACAATATACGAACCTGTTTGCAAGCTCTGAAGCAGACAATAATTCTAACCCTGTTTCTTGTCTCACGGATCACAAATCATGTGCTAAGATTTTTTATAGTCTCCATATAAATTGTGGTGGGAAAGAAGTAACCATAAATGGTGCTAAGTTTGACGGAGATGAAAGTGCAGGCAAGCCATCGGAGTTTGTCTCAAGTAAAACTAATTGGGCATTCAGCAATACTGGTGTATTTTTGAAAGATACACGCTTTATATCTGACTATATTCAGATGAATCAGTCACTGAACTATTCTACACCATATTCCAAACTATATGAGACTGCTCGAGTTTCCCCAATATCCCTTACATATTATGCGTATTGTTTTGCAAATGGGAACTACACAATAAGCCTCCATTTTGCAGAGATTGATTTTACAAATGCTGCAATTCTTGGCAGTTCTGAAAGACACATTTTTAATGTTTACATTCAGGGAAAGCTTGTGCTGAAGGATTTTAGTATTGTAGATGCTGCAGAGATTCGATTTTATTGGGCTGGAAAGGGGACATCTGTGCTGGGAGGCTACGGCCCTCTGATATCAGCCATTTCGATTGAGTCTGACTTTGAGTCTCCATCAAAAGGACGAAAACTCTTACCAGTAGGTGCTATACTTGGAATTGTGGCTGCAGTTGCCCTTGTTATAATTTCAATTCTTGGAATTCTATGGTGGCAAGGTTGCCTTGGACGGAAAAACACACTTCATCAAGATCTTAGAGGTCTAGATCTGAAAACTGGTTCATTCACATTAAGGCAAATCAAAGCTGCCACAAATAATTTTGACGTTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTCTTTTGGATGGCACCATAATTGCAGTGAAACAACTTTCCTCCAAGTCAATGCAAGGAGCCCACGAGTTTGTGAATGAGATAGGCCTCATATCTGCTTTGCATCACCCAAATCTAGTTAAACTTTATGGATCTTGTACCGAAGAAAATCATCTTTTGCTAGTGTATGAATACATGGAAAATAATAGTCTTGCTCAGGCTATGTTTGCCAAAGACTTGGCCTATCTTCATGAGGAATCAAGATTGAAGATTGTTCACAGAGATATCAAAGCGACTAATGTGTTGTTAGATAAAAATCTCAACCCCAAGATTTCGGACTTTGGTCTTGCCAAGCTTGAAGAAGAAGGAAATACACACATAAGCACTCGAATTGCTGGAACTTTTGGTTATATTGCGCCAGAGTATGCATTGCGAGGTTACTTAACTGATAAAGCAGACGTGTACAGTTTTGGTATTGTGGCCTTGGAAATAGCACTTGAATTAAAAGAAAAAGAGAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGGTCCAATTTCAACCAGAGAGAGGCAATGACCATGATCAATATTGCTCTGCATTGCACCAATGTGGTGCCTGGAGAAAGGCCATGCATGTCTTTAGTGGTGGGGATGTTGGAAGGCAAGGTTGATGTGAAGGAGTTGGTTTCTCATCCAAATGAGTCGAGAGCAGAGATGGGTGCAATGTGGACCATTTTGAAGCAGAGTTTGAAACAAACTGACAATCAGAACCAGGAAGAGATTATGTCTACGGACATGTCAAGTACCAATTATTCTTCAGCATCAATGAGTAGAAACTAG 2616 40.02 MLEGRSTIIVASLVVSLIISFAFGFDPLLPLDEVEGLKYVAETLGKRDWNITTNSCMEEGSIMECNCTYINHTVCHITTITLTSQNLEGTLPSQLFRLPYLEALDLARNRLTGSIPEEIGNITTLQFLNLEVNRLSGSLPSTLGNLVNLQTLRLASNNFTGKLPASLGMLTSLTSIQISDNNFEGQIPSFIQNWISVTRIEAHASGLSGPLPSEIGLLTKLTDLRISDLNGDSSSPFPPLQNLTSIIYLDLSFNKISGQIPPNFQDLEDVDYIFLTGNLLNGSLPNWMLEKGHNIDLSYNKFEQLSNGCQSQYTNLFASSEADNNSNPVSCLTDHKSCAKIFYSLHINCGGKEVTINGAKFDGDESAGKPSEFVSSKTNWAFSNTGVFLKDTRFISDYIQMNQSLNYSTPYSKLYETARVSPISLTYYAYCFANGNYTISLHFAEIDFTNAAILGSSERHIFNVYIQGKLVLKDFSIVDAAEIRFYWAGKGTSVLGGYGPLISAISIESDFESPSKGRKLLPVGAILGIVAAVALVIISILGILWWQGCLGRKNTLHQDLRGLDLKTGSFTLRQIKAATNNFDVSNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSMQGAHEFVNEIGLISALHHPNLVKLYGSCTEENHLLLVYEYMENNSLAQAMFAKDLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYALRGYLTDKADVYSFGIVALEIALELKEKESLMELVDPRLGSNFNQREAMTMINIALHCTNVVPGERPCMSLVVGMLEGKVDVKELVSHPNESRAEMGAMWTILKQSLKQTDNQNQEEIMSTDMSSTNYSSASMSRN 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29386547 29395081 - CmPI595203_11g017260.1 Cmu11g1726 430248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1726 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1726 871 SMART serkin_6 582 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1726 871 SUPERFAMILY Protein kinase-like (PK-like) 568 817 IPR011009 -
Cmu11g1726 871 FunFam Nuclear pore complex protein NUP107 41 189 - -
Cmu11g1726 871 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Cmu11g1726 871 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515(InterPro)
Cmu11g1726 871 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Cmu11g1726 871 Pfam Malectin domain 344 483 IPR021720 -
Cmu11g1726 871 Gene3D Ribonuclease Inhibitor 37 193 IPR032675 -
Cmu11g1726 871 Gene3D - 347 509 - -
Cmu11g1726 871 FunFam Os07g0541700 protein 653 726 - -
Cmu11g1726 871 ProSiteProfiles Protein kinase domain profile. 582 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1726 871 MobiDBLite consensus disorder prediction 846 871 - -
Cmu11g1726 871 Gene3D Phosphorylase Kinase; domain 1 551 657 - -
Cmu11g1726 871 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 551 657 - -
Cmu11g1726 871 SUPERFAMILY L domain-like 74 307 - -
Cmu11g1726 871 Pfam Leucine rich repeat 76 135 IPR001611 GO:0005515(InterPro)
Cmu11g1726 871 Pfam Protein kinase domain 583 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1726 871 Gene3D Ribonuclease Inhibitor 194 346 IPR032675 -
Cmu11g1726 871 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 834 IPR051824 -
Cmu11g1726 871 Gene3D Transferase(Phosphotransferase) domain 1 658 853 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1726 Cmu-Chr11:29386547 Cmu11g1728 Cmu-Chr11:29414431 9.90E-16 dispersed
Cmu11g1726 Cmu-Chr11:29386547 Cmu11g1727 Cmu-Chr11:29398884 3.60E-207 tandem
Cmu11g1726 Cmu-Chr11:29386547 Cmu07g1022 Cmu-Chr7:24961755 2.40E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75955 PF00069 Pkinase 3.20E-37 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1726 - - - 0.0