Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1727 ATGTTCATGGCTCGATTCCTCGCCGTCTTTCTTTTCTTTTCTCTCGTTTCCGCCATCCCTCAGCTGCCGGCCGACGAAGTTGAAGCATTAAAGGAGATCGGAAAGGCATTGGGGAAGGCGGACTGGAATTTCACGGCGAATCCATGCGGCGGTTTGGGTAGCGGTTGGATAACCAATTCTTTCGAAACGGGGTTTGTTAATAATCTCACATGCAACTGCACCTTCCAGAATAACTCCGTTTGTCACGTCACTAAAATCCGTCTAAGGTCACAGAACCTTCCAGGCATTCTGCCGCCACAACTAGTGAGGCTGCCTTACTTGGAAGAACTTGATCTTGCCCGCAACTATCTCAGCGGTCCAATTCCTCCAGAATGGGGTGCTTCAAAGCTTGTCAACATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAGTTGATCCTTGAAGTTAATCAGTTGTCTGGAAGTCTGCCTCCAGAACTTGGAAAGCTGACCAGGTTATCAAGATTACTTCTTTCCTCAAACAACTTTTCCGGGGAGCTCCCATCTTCACTGGGAGCTATAACCACATTGACGGACCTTCGAATTAGTGATAATCACTTCACAGGGTCAATACCCAAGTATATTCAGAATTGGCCGAATCTTGGAAAACTAGGTATTCAGGCAAGCGGGCTGAGTGGACCAATTCCTTCTGAAATTGGACTTCTGACAAAATTATTGGATCTGAGAATCAGCGACTTGAATGGAGGTTCATCGTCCTTTCCACCCCTTAATTCTTTGACAAAATTGAAAACCCTGATATTGAGGAGCTGCAATATAGTTGGGATGCTGCCTGACAATCTTGATGGGTTGGAAAACGTGCAAACCTTAGACTTTAGCTTCAACAAAATTAGTGGACCAATACCTGCCGGCTTTGAAGCTTTGAAGAAAGTGGATAGAATATATTTAACTGGAAACTTGCTAACTGGAGCTGTGCCTCTTTGGATGCTGCAGGAGGGAGAAAACATTGATCTCTCTTATAACACATTTACTGAGACAGATTTTCAGGCCTTGGGTTGTGAAGCACGAAGTTTAAACCTGTTCGCGAGCTCTTCACAGGACAATACTTCTGGAATAGTTTCATGTTTAGCGGGCACATGTGACAAAACTTGGTACTCTCTCCATATCAATTGCGGTGGGAAGGAAGATTTAATAAACGGAACAATCAGGTTTGATGGAGACACAAACACGGGGAAATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGATGATGATCGCTCAACAGACGACTTCATTGCATTAAGTCCACCTGATCTCCCTATGAAAAATCTTGGATTGTACACCAATGCACGGATTTCTCCCATCTCTCTTACTTATTATGCGTTTTGCATGGGTAATGGAAACTACACAGTAAGCCTACATTTTGCTGAGATAGAGTTTAGTAATGACAAATCATACAAAAGCCTTGGCAGACGCATATTTGATGTCTACGTTCAGAGAGAGCTGGTGTTGAAGGATTTTAATATTGCAGAGGCAGCAGGTGGTGTTGGCAAACCTCTTGTAGAGAAATTCACTGTTTCTGTGACTGATGGTACTATAGAGATCCGTCTATTTTGGGTGGGGAAGGGGACAAATGCAGTCCCTGTAAGAGGAATTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGATCCACCATCAGAAGGTGGAAATGCCATATCCGCTGGAGTGGTTGGAATTGTGGCTGCTGTGGTCTTGGTTATCATCTTGCTTCTAGGGGTCTTGTGGTGGAGAGGCAGCCGAAGAACGAAAAGCACACTTGAACAAGAGTTGAAGGATCTTGATCTCGGAACAGGATCATTTTCATTAAGACAAATCAAAGCTTCCACTAACAATTTTGATGTTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCGTTCTTGCTGATGGCAGTGTAATTGCAGTGAAGCAACTTTCTTCAAGGTCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATATACGAGTATCTGGAAAATAACAGTCTTGCTCGTGCCTTATTCGGACCTGAAGAATACCAACTGAAATTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATACCTTCACGACGAGTCAAGACTAAAGATCGTTCACCGTGACATCAAAGCTACCAATGTTCTTCTCGACAAAAATCTAAACCCGAAGATTTCCGACTTTGGTTTGGCTAGGCTAGATGATGAAGGAAATACACACATCAGCACACGGGTTGCCGGAACCTATGGATATATGGCACCAGAATACGCCATGCGAGGGTACTTAACTGACAAAGCAGACGTTTATAGTTTTGGTGTGGTAGCATTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTGGAACCAAGGATGATTGCTTATATCTTCTTGATTATGCTAACGTTTTAAAAGAGAGAGGGAATTTACTAGACCTTGTCGATCCACGGTTAGGCTCTGAATTCAACAAGACAGAGGCAATGACGATGATCACTATCGCCCTTCAATGCACGAACATCAGTGCTGCAGACAGACCCTCCATGTCAACAGTAGTAGGCATGCTGGAAGGGAAGATTGGTGTAGAGGAGTTGGTTTCAGATCCAAATATCTCAAAGCAAGATGTGAATGCTATGTGGAGCCACATGTACCACCAGAAAGTGAAAACAATGGGCGAGAGCGAGATACAAAGTATGTTGACATGTGAGAGCGAGAGCGAGACCCAAAGTATGTTGATGGATGGACCATGGACTGATTCTTCAATTACTGATAGTGATTGCCTTCCCATCATGGCTGATGCTAGATACTTGGAGAATAGGATTTAG 3042 43.43 MFMARFLAVFLFFSLVSAIPQLPADEVEALKEIGKALGKADWNFTANPCGGLGSGWITNSFETGFVNNLTCNCTFQNNSVCHVTKIRLRSQNLPGILPPQLVRLPYLEELDLARNYLSGPIPPEWGASKLVNISLLGNRLTGPIPKEIGNISTLVELILEVNQLSGSLPPELGKLTRLSRLLLSSNNFSGELPSSLGAITTLTDLRISDNHFTGSIPKYIQNWPNLGKLGIQASGLSGPIPSEIGLLTKLLDLRISDLNGGSSSFPPLNSLTKLKTLILRSCNIVGMLPDNLDGLENVQTLDFSFNKISGPIPAGFEALKKVDRIYLTGNLLTGAVPLWMLQEGENIDLSYNTFTETDFQALGCEARSLNLFASSSQDNTSGIVSCLAGTCDKTWYSLHINCGGKEDLINGTIRFDGDTNTGKSSLFFQGGANWGFSNTGSFMDDDRSTDDFIALSPPDLPMKNLGLYTNARISPISLTYYAFCMGNGNYTVSLHFAEIEFSNDKSYKSLGRRIFDVYVQRELVLKDFNIAEAAGGVGKPLVEKFTVSVTDGTIEIRLFWVGKGTNAVPVRGIYGPLISAISVDPDFDPPSEGGNAISAGVVGIVAAVVLVIILLLGVLWWRGSRRTKSTLEQELKDLDLGTGSFSLRQIKASTNNFDVANKIGEGGFGPVYKGVLADGSVIAVKQLSSRSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLKLDWPTRQKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNPKISDFGLARLDDEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGTKDDCLYLLDYANVLKERGNLLDLVDPRLGSEFNKTEAMTMITIALQCTNISAADRPSMSTVVGMLEGKIGVEELVSDPNISKQDVNAMWSHMYHQKVKTMGESEIQSMLTCESESETQSMLMDGPWTDSSITDSDCLPIMADARYLENRI 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29398884 29412820 - CmPI595203_11g017270.1 Cmu11g1727 430249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1727 1013 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515(InterPro)
Cmu11g1727 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 395 586 - -
Cmu11g1727 1013 Pfam Leucine Rich Repeat 178 197 IPR001611 GO:0005515(InterPro)
Cmu11g1727 1013 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
Cmu11g1727 1013 Pfam Leucine Rich Repeat 202 223 IPR001611 GO:0005515(InterPro)
Cmu11g1727 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Cmu11g1727 1013 Gene3D Ribonuclease Inhibitor 262 371 IPR032675 -
Cmu11g1727 1013 ProSiteProfiles Protein kinase domain profile. 657 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1727 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1727 1013 Gene3D - 395 585 - -
Cmu11g1727 1013 Gene3D Transferase(Phosphotransferase) domain 1 733 940 - -
Cmu11g1727 1013 Gene3D Phosphorylase Kinase; domain 1 621 732 - -
Cmu11g1727 1013 SUPERFAMILY L domain-like 74 355 - -
Cmu11g1727 1013 SUPERFAMILY Protein kinase-like (PK-like) 641 941 IPR011009 -
Cmu11g1727 1013 SMART serkin_6 657 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1727 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 259 - -
Cmu11g1727 1013 Gene3D Ribonuclease Inhibitor 193 261 IPR032675 -
Cmu11g1727 1013 Gene3D Ribonuclease Inhibitor 39 192 IPR032675 -
Cmu11g1727 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 943 IPR051824 -
Cmu11g1727 1013 Pfam Protein tyrosine and serine/threonine kinase 659 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1727 1013 Pfam Malectin domain 397 581 IPR021720 -
Cmu11g1727 1013 CDD STKc_IRAK 663 930 - -
Cmu11g1727 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1329 Cmu-Chr3:8410969 Cmu11g1727 Cmu-Chr11:29398884 5.60E-204 dispersed
Cmu09g2119 Cmu-Chr9:37315976 Cmu11g1727 Cmu-Chr11:29398884 2.10E-199 dispersed
Cmu11g1727 Cmu-Chr11:29398884 Cmu11g1729 Cmu-Chr11:29438639 1.50E-212 dispersed
Cmu11g1726 Cmu-Chr11:29386547 Cmu11g1727 Cmu-Chr11:29398884 3.60E-207 tandem
Cmu11g1727 Cmu-Chr11:29398884 Cmu11g1728 Cmu-Chr11:29414431 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75956 PF07714 PK_Tyr_Ser-Thr 4.60E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1727 - - - 0.0