Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1728 ATGCTGTTGGCTCGATTACTCGCCGTCGTTTTTTTCTCATCTCTCTGCTTCGTAACCCTCACTTCCGGAGCCGCTCTGTTGCCGGCCGACGAAGTGGAAGCGTTGAAGGAGATCGGAAGGACATTGGGGAAGACGGGGTGGGATTTCACCGCCGATCCATGCGGCGGCGTTAGTAGCGGTTGGGTATCGAATTCCAAACAATTCGATAATAATTTTGCTAATAATGTCACGTGCGACTGCACGTTCCTAAATAATACCGTCTGTCACGTCACCATCATTGTTCTGAAGGCGCAGAGCCTTCAAGGTACTCTGCCTCCGCAACTAGTGAGGTTGCCTTTCCTGCAGGAACTTGATCTCACTCGCAACTATCTCAGCGGCCCGATTCCTCCAGAATGGGGTTCAACCAAGCTTCTCAAAATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCACCACTCTTACAGACTTGGTTTTGGAAATGAATCATTTTTCTGGAAGTATACCTCCAGAACTTGGAAATTTGACCAACTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCACCTTCCTTGGCAAGGATAACCTCATTGACGGACTTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGCGACTTGAATGGAGGTTCATCGCCCTTTCCGCCCCTTAATTCTTTGACAAAATTGAAAACCCTGATATTGAGGAGTTGCAATATAACTGGGATGCTACCCGACAATCTTGGTGGTTTGACATCATTGAAAATCTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGATAGCTTTGAAGCATTAAAAAAAGTGGATAGCATATATCTAACTGGAAACTTGCTAAATGGATCAGTGCCCATTTGGATGCTAGATCAAGGAGAAAGCATTGATCTCTCTTATAACAAATTTACTCAGAGAAACTCTCAGAACACTGGTTGTCAATCACGAAATTTAAACCTATTTGCAAGCTCTTCACAGGACAATAATTCTGGAGCAGTCTCATGTTTAGGCACTTGTCAAAAAACTTGGTACTCTGTCCATATAAACTGCGGAGGGAATGAAGAATTAATTAATGGAACAACCAAATTTGATGCTGACGCAAACACTGGAAGATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGTAATACTGGCAATTTTATGGACGATGATCGCTCAACAGACGATTTTATTGCATTAAACTCATCTACTCTCTCAATACCAAATCCTGAATTGTACATGAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCATATTGCTTGGGTACTGGAAACTACACACTAAGCCTTCATTTTGCTGAGATAATGTTTACTAATGACAAAACATACAGTAGCCTTGGCAGACGCTTATTTGATGTTTACGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTATTGGCAAACCTTTTGTAAAGAAATTCAAAGTTTCAGTGACTAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGAAAGGGGTCAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCCGCCATTTCTGTTGATCCTGACTTTACGCCACCATCAGAAGGTGGAAATGCCATATCTGCCGGTGCAGTGGTTGGAATTGTGGTTGCTGTGGTCTTTGTTATCATCTTGGTTCTTGGACTGTTGTGGTGGAGAGGCTGCCTAAGAAAGACAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCTGCTACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTATTCTTGCAGATGGCACCGTAATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGCTAATATATGAGTATTTGGAAAACAATAGCCTTGCTCGGGCCTTATTCGGACCTGAAGAATGCCAACTGAAATTGGATTGGCCAACTAGGCAAAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATACCTTCACGAGGAGTCAAGACTTAAGATCGTTCACCGAGATATCAAAGCTACCAATGTTCTACTCGATAAAAATCTCAACCCCAAGATTTCCGACTTCGGTTTGGCAAAGCTGGATGAAGAAGAAAATACACATATCAGCACCCGGGTTGCTGGAACCTATGGGTATATGGCACCAGAATATGCCATGCGAGGCTACTTAACTGACAAGGCAGATGTGTACAGCTTTGGTATTGTGGGGTTGGAGATAGTCAGTGGTCGAAGCAACACAAGTTTCCGGACCAAGGACGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAGAAAGACCGTTTATTAGAGCTTGTCGATCCACGGTTAGGCTCTGATTTCAACAAGAGAGAGGCAATGACGATGATCAACATTGCTCTCCAATGTACAAACGTCGTTGCTGGTGACAGGCCTGCCATGTCATCAGTGGTGAGCATGCTGGAGGGGAAGGTTGTTGTGAAGGAGGTGGTTTCAGATCCCAGTGTCTCAAAACAAGATGTGAATGCAATGTGGAGCCAGATTTATCGCCAGAAAGGGGAAACAACGAGTGTAAGCCAGACGCAAAGTTTGACTATGGATGGACCATGGAGTGGTTCTTCAACAACTGCCAGTGATCTCTATCCCATCAACATGGATTCTAAATACTTGGAGAATAGAAACTAG 2955 42.67 MLLARLLAVVFFSSLCFVTLTSGAALLPADEVEALKEIGRTLGKTGWDFTADPCGGVSSGWVSNSKQFDNNFANNVTCDCTFLNNTVCHVTIIVLKAQSLQGTLPPQLVRLPFLQELDLTRNYLSGPIPPEWGSTKLLKISLLGNRLTGPIPKEIGNITTLTDLVLEMNHFSGSIPPELGNLTNLSRLLLTSNNFSGELPPSLARITSLTDLAIQASGLSGPIPSEIGLLTKLTDVRISDLNGGSSPFPPLNSLTKLKTLILRSCNITGMLPDNLGGLTSLKILDFSFNKITGPIPDSFEALKKVDSIYLTGNLLNGSVPIWMLDQGESIDLSYNKFTQRNSQNTGCQSRNLNLFASSSQDNNSGAVSCLGTCQKTWYSVHINCGGNEELINGTTKFDADANTGRSSLFFQGGANWGFSNTGNFMDDDRSTDDFIALNSSTLSIPNPELYMRARISPISLTYYAYCLGTGNYTLSLHFAEIMFTNDKTYSSLGRRLFDVYVQGKLELKDFNIADAAGGIGKPFVKKFKVSVTNGTIEIRLFWAGKGSNAIPVRGVYGPLISAISVDPDFTPPSEGGNAISAGAVVGIVVAVVFVIILVLGLLWWRGCLRKTSTLEQELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGILADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPEECQLKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVGLEIVSGRSNTSFRTKDDCFYLLDHANTLKEKDRLLELVDPRLGSDFNKREAMTMINIALQCTNVVAGDRPAMSSVVSMLEGKVVVKEVVSDPSVSKQDVNAMWSQIYRQKGETTSVSQTQSLTMDGPWSGSSTTASDLYPINMDSKYLENRN 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29414431 29426147 - CmPI595203_11g017280.1 Cmu11g1728 430250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1728 984 FunFam Putative LRR receptor-like serine/threonine-protein kinase 716 923 - -
Cmu11g1728 984 Pfam Leucine Rich Repeat 184 204 IPR001611 GO:0005515(InterPro)
Cmu11g1728 984 Pfam Leucine Rich Repeat 114 133 IPR001611 GO:0005515(InterPro)
Cmu11g1728 984 Pfam Leucine Rich Repeat 161 182 IPR001611 GO:0005515(InterPro)
Cmu11g1728 984 MobiDBLite consensus disorder prediction 946 967 - -
Cmu11g1728 984 SUPERFAMILY Protein kinase-like (PK-like) 624 935 IPR011009 -
Cmu11g1728 984 Pfam Protein tyrosine and serine/threonine kinase 643 910 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1728 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1728 984 SUPERFAMILY L domain-like 77 338 - -
Cmu11g1728 984 Pfam Leucine rich repeat 256 315 IPR001611 GO:0005515(InterPro)
Cmu11g1728 984 Gene3D Ribonuclease Inhibitor 241 356 IPR032675 -
Cmu11g1728 984 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 609 715 - -
Cmu11g1728 984 Pfam Malectin domain 379 563 IPR021720 -
Cmu11g1728 984 SMART serkin_6 640 911 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1728 984 Gene3D Phosphorylase Kinase; domain 1 607 715 - -
Cmu11g1728 984 CDD STKc_IRAK 646 911 - -
Cmu11g1728 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 377 568 - -
Cmu11g1728 984 Gene3D - 376 567 - -
Cmu11g1728 984 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 199 - -
Cmu11g1728 984 Gene3D Ribonuclease Inhibitor 28 240 IPR032675 -
Cmu11g1728 984 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 927 IPR051824 -
Cmu11g1728 984 ProSiteProfiles Protein kinase domain profile. 640 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1728 984 Gene3D Transferase(Phosphotransferase) domain 1 716 929 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1726 Cmu-Chr11:29386547 Cmu11g1728 Cmu-Chr11:29414431 9.90E-16 dispersed
Cmu11g1728 Cmu-Chr11:29414431 Cmu11g1730 Cmu-Chr11:29450308 1.50E-201 dispersed
Cmu11g1727 Cmu-Chr11:29398884 Cmu11g1728 Cmu-Chr11:29414431 0.00E+00 tandem
Cmu11g1728 Cmu-Chr11:29414431 Cmu11g1729 Cmu-Chr11:29438639 9.60E-201 tandem
Cmu03g1329 Cmu-Chr3:8410969 Cmu11g1728 Cmu-Chr11:29414431 1.00E-200 transposed
Cmu07g0997 Cmu-Chr7:24684644 Cmu11g1728 Cmu-Chr11:29414431 1.20E-214 transposed
Cmu09g2119 Cmu-Chr9:37315976 Cmu11g1728 Cmu-Chr11:29414431 1.60E-199 transposed
Cmu09g2157 Cmu-Chr9:37667281 Cmu11g1728 Cmu-Chr11:29414431 1.10E-143 transposed
Cmu10g2905 Cmu-Chr10:35423622 Cmu11g1728 Cmu-Chr11:29414431 1.90E-90 transposed
Cmu11g1728 Cmu-Chr11:29414431 Cmu07g0331 Cmu-Chr7:3252650 4.70E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75957 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1728 - - - 0.0