Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1730 ATGGATTTTTGTATTTGGAGCTTGAAGAGTGTTTGTGTATTGCTGCTTTTCAGCTGCTTCTTCCACTTTAGATCTCATGCCCAACCTTTACCTCAACAAGAAGTGAGTGCCCTCGAAGAAATATCTACAAAGTTAAAGAACTTAAATTGGAAAGTGCATCAAAATTCTTGCATTAATGGCGATGGCTTTTCCAATCTGTTTATCAGTTCCATTAATTTGAGAGAGGTCAATTGCACTTGTACCACTATTTGCCACGTCACTAGCATACGGCTAAAAGGTCTTAATCTAGTTGGAGTTCTGCCCGTAGAATTTGCAAATCTGACTCAACTCCGGGATTTAGATCTCACTTACAATTTTATTTCTGGATCAATCCCAAGACAATTTGGTCGCATTCCTCTCCTTACGTTTTCCATAATTGGAAACCGACTCAGCGGTGAGATTCCTCCTGAAATTGGTGATATTGCTTCACTTGAGGAACTGATCTTGGAAGACAATCAGATTGGAGGAAATCTTTCTGAAAATCTTGGAAAACTAACCAGCTTACGTCGATTTCGGGTGGATGGAACTAACATATCAGGAAAGATACCTCAATATATTGGCAACTGGACCAAACTTCTTAAATTGTATGTTCAAGGAACTTCAATGGAGAATCCTATTCCTCCTTCCATATCCGACTTGAAAAACTTAACCGAATTGGTCTTGAGAAATTGTTTAATCGAGGGTCGTATTCCTGAATATATTGGATCGTTTAATGAATTAAGAACTTTAGATCTAAGCTTCAACAGATTAAGTGGTCCAATTCCAGAAACATTTCAAAATCTATTCGTCCAAAAAACTGCCTTCATGTTTCTGAATAACAACTCCTTAATCGGGCAAGTTCCGAGTTGGATTATTGCCCAAGGTAGCAGCAGCAATAGAAACATAGATTTATCTTACAACAATTTTACTGGAATAAGCGATTTTAGTTGTACACAGTCTAATAATATTAACTTGGTTTCAAGTTCTACCGCAAAGAATAAAAGTGATGGTTGGTGCCAAATGAAGGATCTCCCTTGCTCTACAAAACCTCAATTTGATTCATTGTTCATTAATTGTGGAGGAGGAAGTATGGAATTTAATGGTAGTAGATATGAAGGGGATGATACTCAAGGTGGGAAAGCCAATTTCTTTTTCTCAACACAAAGATGGGGTTACACTACTACTGGTGTTTCATTGCTAAATGATCACCTTCCTTTCAAACTATCATCTACCAATTCCTCTGTTTCTTCTTCTTCTTCACCAACCCTCTATTCCACTGCCAGACTTTCCCCTCTTTCTCTCAATTACTATGGCCTTTGCCTCATCAGTGGAAGCTACAATGTCAAGCTTCACTTTGCTGAAATTTTGTTTACTCCTGACCAAACTTATACCAGCCTTGGAAGACGTATTTTCGATATCTCCATTCAAGGAAAGTTGATTAAGAAGGATTTTAACATAGCGGAGGAAGCTGGAGGTGTTGGTAAAGAGTTTATTTTAGAAGTGCCTAATGTTATGGTCAATAATGGAAGTAGTACTCTTGAGATCTCCTTGTATTGGGCTGGTAAAGGAACAATTTACATTCCATACTTAGGGGTGCATGGACCTCTGATATCTGCAATCACCGTCACACCAAACTTCAAAGTGGAAACTAATGTGGAAACTAGAGGGCTACCGGCTGGAGCTATTGCTGGCATTGTTGTTGGTATTTTCGTCTTTGTCGTCCTAGTATTTGTTGTTCTTCGATGGGAGGGTTATTTAGGCGGAAAGGAAACCGAAGACGATGAACTTCGAGACTTGAAATTACAAACAGGTTATTTCAGTTTAAGACAAATCGGGGCAGCCACCAACAGCTTTGACTCTGCTAATAAGATTGGGGAGGGAGGCTTTGGTCCTGTCTACAAGGGAGTACTATCAGATGGCACTTCAATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAATTCATCACAGAAATTGGGATGATTTCTGCGTTACAACATCCAAATCTTGTTAAGCTTTATGGTTGCTGTATTGAAGGAAACCAATTGTTGCTTATTTATGAGTATCTACAGAACAATAATCTTGCTCGAGCACTTTTTAGCCCTGAGAAACATTCCTTGCATTTGGATTGGCCAATAAGAATGAAGATATGTTTGGGAATAGCAAAAGGGTTGGCTTATCTTCATGAAGAATCAAGATTGAAAATTGTTCATAGAGATATAAAAGCTACTAATGTTCTACTTGATGGAAACTTGAATGCCAAGATCTCTGATTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACTCATATTAGCACAAGAATTGCTGGCACAATTGGTTATATGGCTCCTGAATACGCAATGAGGGGTTATTTGACTGATAAGGCTGACGTTTATAGCTTTGGAGTGGTGGCATTAGAGATTGTTAGTGGTAAAAGTAATACGAATTACAGACCGAAAGAGGAATTTGTTTATCTTCTTGATTGGGCTTGTGTTCTACAAGAGGAAGGGAACTTACTTGAACTTGTTGATCCAAATCTTGGCTCACATTACTCAAAAGAGGAGGTCATGAGGATGCTTCATATAGCTCTCTTGTGCACAAACTTGTCTCCAAGTCTCAGACCATCCATGTCTTCTGTGGTTAGCATGCTTGAAGGTAAAATCACAGTCGAAGTATCGAACATCAAGCGCAACACGACCGGTCGAGAGGCAAGGTTCAAAGCATTTGATCACAAACTGTCACCAGATAGCCTAACAAGCATTTCGACCTCGTCGCAATTGCAAGGCATTGAGACGCAAAAAAGCATGTTAATGGATGGGTCATGGATTGACTCATCATCTACTTTTACTCAAGACAGAGACAATGCTCGAGAGCATTCTTCAACAAGAAGTCTCCTTACAGATTCATTCTAA 2946 39.1 MDFCIWSLKSVCVLLLFSCFFHFRSHAQPLPQQEVSALEEISTKLKNLNWKVHQNSCINGDGFSNLFISSINLREVNCTCTTICHVTSIRLKGLNLVGVLPVEFANLTQLRDLDLTYNFISGSIPRQFGRIPLLTFSIIGNRLSGEIPPEIGDIASLEELILEDNQIGGNLSENLGKLTSLRRFRVDGTNISGKIPQYIGNWTKLLKLYVQGTSMENPIPPSISDLKNLTELVLRNCLIEGRIPEYIGSFNELRTLDLSFNRLSGPIPETFQNLFVQKTAFMFLNNNSLIGQVPSWIIAQGSSSNRNIDLSYNNFTGISDFSCTQSNNINLVSSSTAKNKSDGWCQMKDLPCSTKPQFDSLFINCGGGSMEFNGSRYEGDDTQGGKANFFFSTQRWGYTTTGVSLLNDHLPFKLSSTNSSVSSSSSPTLYSTARLSPLSLNYYGLCLISGSYNVKLHFAEILFTPDQTYTSLGRRIFDISIQGKLIKKDFNIAEEAGGVGKEFILEVPNVMVNNGSSTLEISLYWAGKGTIYIPYLGVHGPLISAITVTPNFKVETNVETRGLPAGAIAGIVVGIFVFVVLVFVVLRWEGYLGGKETEDDELRDLKLQTGYFSLRQIGAATNSFDSANKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLQNNNLARALFSPEKHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDGNLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWACVLQEEGNLLELVDPNLGSHYSKEEVMRMLHIALLCTNLSPSLRPSMSSVVSMLEGKITVEVSNIKRNTTGREARFKAFDHKLSPDSLTSISTSSQLQGIETQKSMLMDGSWIDSSSTFTQDRDNAREHSSTRSLLTDSF 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29450308 29461530 + CmPI595203_11g017300.1 Cmu11g1730 430252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1730 981 Gene3D Phosphorylase Kinase; domain 1 593 699 - -
Cmu11g1730 981 SMART serkin_6 624 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1730 981 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 220 318 - -
Cmu11g1730 981 Gene3D - 360 551 - -
Cmu11g1730 981 FunFam Putative LRR receptor-like serine/threonine-protein kinase 700 907 - -
Cmu11g1730 981 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 358 551 - -
Cmu11g1730 981 ProSiteProfiles Protein kinase domain profile. 624 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1730 981 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 593 699 - -
Cmu11g1730 981 Pfam Leucine Rich Repeat 228 249 IPR001611 GO:0005515(InterPro)
Cmu11g1730 981 Pfam Leucine Rich Repeat 253 274 IPR001611 GO:0005515(InterPro)
Cmu11g1730 981 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515(InterPro)
Cmu11g1730 981 SUPERFAMILY L domain-like 64 345 - -
Cmu11g1730 981 CDD STKc_IRAK 630 897 - -
Cmu11g1730 981 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 917 IPR051824 -
Cmu11g1730 981 Gene3D Ribonuclease Inhibitor 202 334 IPR032675 -
Cmu11g1730 981 MobiDBLite consensus disorder prediction 959 981 - -
Cmu11g1730 981 Pfam Protein tyrosine and serine/threonine kinase 627 894 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1730 981 FunFam Leucine-rich repeat receptor protein kinase EMS1 100 196 - -
Cmu11g1730 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1730 981 Pfam Malectin domain 361 546 IPR021720 -
Cmu11g1730 981 SUPERFAMILY Protein kinase-like (PK-like) 608 900 IPR011009 -
Cmu11g1730 981 Gene3D Transferase(Phosphotransferase) domain 1 700 918 - -
Cmu11g1730 981 Gene3D Ribonuclease Inhibitor 32 201 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g1728 Cmu-Chr11:29414431 Cmu11g1730 Cmu-Chr11:29450308 1.50E-201 dispersed
Cmu11g1729 Cmu-Chr11:29438639 Cmu11g1730 Cmu-Chr11:29450308 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75959 PF07714 PK_Tyr_Ser-Thr 2.80E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1730 - - - 0.0