Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1757 ATGAATGAATGTGGTTTATGTGTGCTGTTTGATGGAGTTGGATTGAGGGGAAAGATGAGATTCAAGCGGTTTCTGACAATTGTCCTTATGAGATTTCTGCAAATGGGTATGAATGGGGTTTTTAAAATTTTGTTTTCTTCTTCTCGTTTGTCGGATTTCTGGAAACTGGATGATGGCTTTGAGGGATCTGCAAGCGAAGACATTATTTTTAGGGAGGTTTTCTTTGGCAACAGCTCTAGCCATTCCAATAGGATGTGTCCTCACAAGGTAGTTAGTCATGAATGCGGGCCCTGTAAAATTAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCAACAGTGTCTAGTTATTCATACTCAAGAAATATGAAGCTTGATGAATGTTACAATGCTACGGAGAATATTAGGACCAGTTCTGCACCTAATAGTCTGCCATGCAAATGGACTTCAGTGCAAGGCGACAACGTGAATGCAAGTGCTAAGCGAATAAAACTGTCAACTGATGAAGCCTCTGATTCTGTATCCAATCTAGTTAAGGTTATGAAATCATCAGATGGTATAAGAGAACCTGTTTCCACTAATTGCTGTCCAGCTGAGGACTGTGATTCTGAATCATTTACATTCCACATTGTAGAATCTTCTAGACAGGGAATTATATCAAGTTGCTATCTGCTTAAGCACTTTGTTGAAAGGGACAATAATCTGGGTGATCCCAATGCCTCCAAACGAACATCACTGAATTTAGAAGGTAACGATGAACCCAATGTGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTCTTGGTAGCAAGTCCTGATACTCTCAACGAGAAGTTTGGATCTCCACTGCATCTAGAGGTAGGACAAATGAAATTTCTATGTCCAGAACTGGATACTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCTCTTCTCCACTACCATGTTGTTCACCTGTTTATTGCAGCTGGATGGTCTATTGAAAGGGTCAAAAGACCTTGTCGGCGTTATATGGAAACGATGTACAGGTCACCCCAGGGAAGAGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTTCTGTTTGCTGATAAGTGTAGTTTTGCAAAGAAAGTTGACAGCAGAGAATGGACTGGCATTCATCAATTCTTATTTGATCTTTCTGACACATTGTTACAGGTTGGGAACGAAATGAATCAATTAGGGGCTACAACTTCATTGGCTCATTGCTGGGCTATTCTAGATCCCTATGTGGTGGTTGTGTTCATTGACAGAAAGATCGGTACCCTTAGGAAGGGAGATTTAGTTAGAGCTACCTGTAGTATTGGGGTTAATGGGAACAATAAGACCGATACTTTCGTGACATTAAAAAATGAAGACAGTAGTATCTGTAACCTATCTGCTGACAAAAACCCGTCACCACCACATGATAATTCACCATCTGCCAAGAGTGCATTGACAGAGGCGGCATTAAAAGATCTTGATGGGGGCAATTGTGCTTTTGATGAGCAAATCTGTGATACAAGTTTCTCCAATTACTATGGGCATACAGAAGATGGAACAATGAACTTTCTGACAAAGGTGTCTAATTATGACCCCAATTTGGGGAACAGTCTGAATTGCATGGGCAGTCATTGTAATGAACCTGGAAACAAGATAGACACTGAGGATTTAACTTCATTACCTGCTTATTTTTCAGGCTCCACCTGCAAACCTAGATGTCTGGCTGATGGTCCTGTTCCATCTGGAAATTCAGATAATGTTGTCAGAATTTCTGGCCTTACATCTCCCGATGAGGATAGCACTTTGTGTTGTTCGGATGAACAAAGCTCTGAAAATCATGTTGAAAAGCCTAATGAAATGGTGAAAAATGTACTAACGTGTTCCCTAGTAGAAGAAAAAAAGGTGGAAGTCCCACTTGATGATAAGGTGGAGAATAATTTGGAAGAATCTCTGAATAACTGTCCAAACTATACAAGTGACGATTTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATGAAGAAGGTGGGCTGCACTTTTCAGCTTCAATGTTCAAAACAGAGAATAAAGTTTCTGCTACACATTCTATTTTGAAGAAGAAAGGACGTCGAAAGTGTAAAAAGATATCTGAAATTAAACCTACCTTGCCACCTCATATTGATATTGTGAGTGTGACTCCTGGAAAGAAAACTGAGTTGTGGGATATTGATGGGAATTGCTCTCAGTTAGATATGATAGAAGACCAGAAGTCCCATATAGCTGATACTAAAAACGTGGACGATCACGAGAAGAGCTTGTCTCTCAGTCCTGTTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAATAAGAATTTTGACAGTCTTAAAGGTTCAAAAACCAGAAAGAAGAAATCGAATGAATGTCAAATTGAAGATGACGATCTATTAGTTTCAGCCATTATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATCTTCCCATGTAAGGAAATACTTAAAATCTAGAGCAAAAATGAACCGCAAAAGACAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCATAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCGAATGATATAATCCAATACCAAAGCCCTAAGGATGACAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATCTGCAATTGCTGCGGTGAGCTACTCTCAATATCTGGATTTAAAAGTCACGCAGGTTTCAAATTTAATCGCCCTTGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACTGTTCAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATCTGCTGTGATAATTGCCCTTCTACATTCCATCATTCTTGTTTGTCAGTTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAATTGTACATGCCAGATATGTGGTGGTCTTGTGAATTATGAAGAGACTTCAAGTTCGTCTGATGCGCTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCGATGCCTGAAACAAAAAGACATCGATTCTGGAGTAGAATCTCATGTTTGGTTTTGTAGTGGGAGTTGCCAGAAGATTTACACAGCTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCAAATGGGTTTTCATGGATGCTTCTTAGATGCATTCATAATGACCAGAAAATTCTGTCTACCCCACGCTTAGCTATGATGGCAGAATGTAATTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGGACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACTGTGATACTAGAGAAAGATGATGTGCTGCTATGCGTAGCTTCTATCAGGGTACATGGATCAGAAGTGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGACGCCAAGGAATGTGTAGGCGTCTACTGAATGCTATTGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACTGAAGGTTTTGGCTTTGTACCTGTGGAAAATGATGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCCGGAACAATACTCCTAAAGAAGGCTCTGTATTTAAGTGGCCAAAATACAGAGACAACAGAAGGAATTCACTCAGGAGTACAACTTGACACCGATGCTAAACGACAATGCAATTCCAACGAAGCATGTCCTAGAATGGAAATAAAATGTTCAAAATATCAAGAATTGCAAGAACACAATCATGAAAAGATGATGGACGACCACGAAGGAAATCCAGCTCTTCCGATTGATTCATCTACGTTGCAGGTGGTTGAATCAAATGGAATGGATACTTCTTCAGGACAAAAGTCTGTTGAGTCAGTACCTCAACCTGATGGAAACTATTGCACTGACATAGTTGGTGCCACAACCGAAACCCGCACGCACAAGGGGAAAGAGTCATTAGAAGTAGAAGTTGGCGCAAAACATGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTCCATGCAGCCACGATGACAAGATTTGTAGAACCTGTTGTTCTAACTTAG 4356 40.73 MNECGLCVLFDGVGLRGKMRFKRFLTIVLMRFLQMGMNGVFKILFSSSRLSDFWKLDDGFEGSASEDIIFREVFFGNSSSHSNRMCPHKVVSHECGPCKINDASLCSSSELSTVSSYSYSRNMKLDECYNATENIRTSSAPNSLPCKWTSVQGDNVNASAKRIKLSTDEASDSVSNLVKVMKSSDGIREPVSTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVERDNNLGDPNASKRTSLNLEGNDEPNVVNKVSASPVSQESSMTRLLVASPDTLNEKFGSPLHLEVGQMKFLCPELDTSLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETMYRSPQGRAIREFSKAWRVCGELLFADKCSFAKKVDSREWTGIHQFLFDLSDTLLQVGNEMNQLGATTSLAHCWAILDPYVVVVFIDRKIGTLRKGDLVRATCSIGVNGNNKTDTFVTLKNEDSSICNLSADKNPSPPHDNSPSAKSALTEAALKDLDGGNCAFDEQICDTSFSNYYGHTEDGTMNFLTKVSNYDPNLGNSLNCMGSHCNEPGNKIDTEDLTSLPAYFSGSTCKPRCLADGPVPSGNSDNVVRISGLTSPDEDSTLCCSDEQSSENHVEKPNEMVKNVLTCSLVEEKKVEVPLDDKVENNLEESLNNCPNYTSDDLSHSCASGVVQKSSQNEEGGLHFSASMFKTENKVSATHSILKKKGRRKCKKISEIKPTLPPHIDIVSVTPGKKTELWDIDGNCSQLDMIEDQKSHIADTKNVDDHEKSLSLSPVSCHSERKGSKFNKNFDSLKGSKTRKKKSNECQIEDDDLLVSAIIRNKDVSSSAAGSSHVRKYLKSRAKMNRKRQKSSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIICNCCGELLSISGFKSHAGFKFNRPCLNLFLDSGRPFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSVQELPEGNWYCLNCTCQICGGLVNYEETSSSSDALKCSQCEQKYHGRCLKQKDIDSGVESHVWFCSGSCQKIYTALQSRLGLINQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEVAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEGFGFVPVENDEKQSLHRFNLMVFPGTILLKKALYLSGQNTETTEGIHSGVQLDTDAKRQCNSNEACPRMEIKCSKYQELQEHNHEKMMDDHEGNPALPIDSSTLQVVESNGMDTSSGQKSVESVPQPDGNYCTDIVGATTETRTHKGKESLEVEVGAKHDIQLSEGKSWDEGVHAATMTRFVEPVVLT 1451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29665720 29679676 - CmPI595203_11g017570.1 Cmu11g1757 430279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1757 1451 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1186 1271 IPR016181 -
Cmu11g1757 1451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1042 1099 IPR013083 -
Cmu11g1757 1451 CDD NAT_SF 1191 1251 - -
Cmu11g1757 1451 Pfam PHD-finger 1000 1039 IPR019787 -
Cmu11g1757 1451 SUPERFAMILY FYVE/PHD zinc finger 977 1040 IPR011011 -
Cmu11g1757 1451 Gene3D - 1170 1284 - -
Cmu11g1757 1451 CDD PHD2_CHD_II 999 1039 - -
Cmu11g1757 1451 MobiDBLite consensus disorder prediction 772 795 - -
Cmu11g1757 1451 FunFam Increased DNA methylation 1 990 1042 - -
Cmu11g1757 1451 ProSiteProfiles Zinc finger PHD-type profile. 997 1042 IPR019787 -
Cmu11g1757 1451 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1133 1297 IPR000182 GO:0016747(InterPro)
Cmu11g1757 1451 PANTHER PHD FINGER FAMILY PROTEIN 159 1343 - -
Cmu11g1757 1451 Pfam Tify domain binding domain 922 972 IPR032308 -
Cmu11g1757 1451 SMART PHD_3 999 1040 IPR001965 -
Cmu11g1757 1451 SMART PHD_3 1041 1095 IPR001965 -
Cmu11g1757 1451 MobiDBLite consensus disorder prediction 1373 1394 - -
Cmu11g1757 1451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 990 1041 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1757 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2118 Cmu-Chr5:30715944 Cmu11g1757 Cmu-Chr11:29665720 4.10E-78 dispersed
Cmu11g1757 Cmu-Chr11:29665720 Cmu06g0601 Cmu-Chr6:6820148 2.30E-110 transposed
Cmu11g1757 Cmu-Chr11:29665720 Cmu09g0677 Cmu-Chr9:6293955 2.30E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7192 PF16135 TDBD 1.00E-15 No_clan Cmu TR