Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1784 ATGTTGACTTCTTTTTCCCTTCTCAGTGTTTCTCATTATGTTAGCCTGTCGCCATTGCGTATCTTAGTTCCTCCAACCCGTCATATGTCTTATGTTGACACCCACTTGCTTTACTTCGGGTTCAAGGGCTGCTGCGCATTATCTTATGTTTATATCAATTGTTCTTTTCATGAATTTGGATTCTGTTTCGTTGTCAAATCCATGGGTTTGGTTGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACTAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCGCTTGATGAAATGTCAATTGCATGCATTTTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATATAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCAAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCCAGGCTTCAGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTCCTAGAGCTATAGGTGAAACGTCAGACACTGTGAAAGTATCAAGAAATGTAAGAGATGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCTGGAAATGCACCACGCGACATATCAGAGAACACTAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGTTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCCAGGGGATATCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGACAACGTGATGATTCTGATTCTCCCCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGACAGTGCATCAAACCTTGCGGAGGCAAAAGCTGCAATTCAAGCAGGATTGAGAAAAGCTAATGCAAGAGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAACAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTTTTTGATGCGCCACGAGCATTGCTAAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCGGTTTTGTTTATGTCATCCTTGAAAGAGGTATTTGCAGATGATTCGGAAGGATCGCCTGCTCGTACTGTAATTAATGCACTTATCAATATGGAACACCAAAAACTTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAAATACACAAAATGTCACGGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTTCAGCTTAA 2271 41.52 MLTSFSLLSVSHYVSLSPLRILVPPTRHMSYVDTHLLYFGFKGCCALSYVYINCSFHEFGFCFVVKSMGLVEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEDAETPTNGPRAIGETSDTVKVSRNVRDETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGNAPRDISENTRDSYSMGDASEDEELSGSGTVVIRSPRGYQASTQFHNESSPSGSAQAYFEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSLSPEDSASNLAEAKAAIQAGLRKANARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALLKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVFADDSEGSPARTVINALINMEHQKLGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPENTQNVTDSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSSA 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29931536 29946365 - CmPI595203_11g017840.1 Cmu11g1784 430306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1784 756 MobiDBLite consensus disorder prediction 570 589 - -
Cmu11g1784 756 MobiDBLite consensus disorder prediction 518 550 - -
Cmu11g1784 756 FunFam serine/threonine-protein kinase dst1 isoform X1 75 364 - -
Cmu11g1784 756 MobiDBLite consensus disorder prediction 564 601 - -
Cmu11g1784 756 MobiDBLite consensus disorder prediction 518 551 - -
Cmu11g1784 756 Gene3D Transferase(Phosphotransferase) domain 1 75 365 - -
Cmu11g1784 756 MobiDBLite consensus disorder prediction 707 732 - -
Cmu11g1784 756 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Cmu11g1784 756 MobiDBLite consensus disorder prediction 344 476 - -
Cmu11g1784 756 Coils Coil 104 131 - -
Cmu11g1784 756 Pfam Protein kinase domain 79 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1784 756 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 76 723 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Cmu11g1784 756 SMART serkin_6 78 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1784 756 SUPERFAMILY Protein kinase-like (PK-like) 76 362 IPR011009 -
Cmu11g1784 756 CDD STKc_MST3_like 77 350 - -
Cmu11g1784 756 ProSiteProfiles Protein kinase domain profile. 78 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1784 756 MobiDBLite consensus disorder prediction 344 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1784 K08838 - - csv:101214412 1252.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0488 Cmu-Chr5:4108463 Cmu11g1784 Cmu-Chr11:29931536 2.60E-54 dispersed
Cmu05g0633 Cmu-Chr5:5417691 Cmu11g1784 Cmu-Chr11:29931536 2.00E-34 dispersed
Cmu10g2050 Cmu-Chr10:26273580 Cmu11g1784 Cmu-Chr11:29931536 1.30E-56 dispersed
Cmu11g1171 Cmu-Chr11:22544800 Cmu11g1784 Cmu-Chr11:29931536 1.70E-70 dispersed
Cmu11g1784 Cmu-Chr11:29931536 Cmu10g2059 Cmu-Chr10:26455886 1.20E-28 dispersed
Cmu11g1784 Cmu-Chr11:29931536 Cmu05g0923 Cmu-Chr5:8407934 3.00E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu11g1784 . 69 756 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 3.0e-225 778.5
Cmu11g1171 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.5e-67 252.3
Cmu07g0714 . 270 522 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.4e-65 247.3
Cmu11g1784 . 69 753 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 3.7e-231 798.1
Cmu11g1171 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.4e-67 253.4
Cmu07g0714 . 270 522 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.4e-65 248.1
Cmu11g1171 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.2e-241 833.2
Cmu07g0714 . 4 522 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cmu07g0712 . 46 364 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-81 300.8
Cmu09g1829 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 5.7e-253 870.5
Cmu05g0488 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.5e-96 350.9
Cmu10g0933 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 5.9e-248 854.0
Cmu10g0933 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 2.8e-247 851.7
Cmu10g2050 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 1.5e-132 470.3
Cmu10g0933 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.8e-118 422.2
Cmu10g2050 . 1 671 MAP Kinase Kinase Kinase Kinase AT1G79640 59.9 1.1e-216 750.0
Cmu09g1829 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.7e-103 372.9
Cmu10g2050 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.1e-87 320.1
Cmu10g0933 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.4e-75 280.0
Cmu05g0488 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.0 2.7e-143 505.8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75960 PF00069 Pkinase 2.60E-68 CL0016 Cmu PK