Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1789 ATGCTCACAAGATGCAGTGTAAGGGAAGCTGTACCACCAACCAGCCCTCCTGATCAAGTATGCAGATTTAATTCAGGTTCCTATATTTTTGCTCCCACCATTTCCACAAGCAGCATCAACACCACCACCATCCCTACCGCCATTGAGCTGCCGGAGTTGGCAATGGAGGCAAAGAGCTTTGAAGGCAAGCATAATTTCAAAGATAAGCCTTACAAGGAAGGCATGGTCGATGACGATTTAGAATACGAGACGGAGGAGGAAGAGGTTGGCGGAGGAGGCCATGGTGGTAGCAATGCTTGCAATGCATTGGGTTATTTTGAGAATGAGAAAAAGAAAAGAGGGGCAGCAGTTTCCGGCCGTGGAAGGTCCGGTGGGGGCATCTCTTCGCCGAGTTGCCAAGCGCACAACTGTGCAACAGATTTGAGTGAAGCAAAGAGGTATCACCGGCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTTGTCATGGTTGCTGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTAACAGAATTTGATGAAGCAAAAAGGAGCTGTCGTCGAAGGCTGGCAGGGCACAACGAACGTCGGCGTAAGAGCTCGGCAGAGTGTCAAGGGGAAAGCACGAGCCGTAAAGGATCAGCCCCGCAGTCGAAGGAAAGCCATTGTAGGCAATTGGTGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTCCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA 771 50.45 MLTRCSVREAVPPTSPPDQVCRFNSGSYIFAPTISTSSINTTTIPTAIELPELAMEAKSFEGKHNFKDKPYKEGMVDDDLEYETEEEEVGGGGHGGSNACNALGYFENEKKKRGAAVSGRGRSGGGISSPSCQAHNCATDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSAPQSKESHCRQLVEDQRSRIQMAPPGSSGYKHLHIR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30001815 30003632 - CmPI595203_11g017890.1 Cmu11g1789 430311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1789 256 MobiDBLite consensus disorder prediction 212 227 - -
Cmu11g1789 256 FunFam Squamosa promoter-binding-like protein 14 123 193 - -
Cmu11g1789 256 MobiDBLite consensus disorder prediction 197 256 - -
Cmu11g1789 256 Gene3D - 122 193 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu11g1789 256 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 89 231 IPR044817 GO:0003677(InterPro)
Cmu11g1789 256 ProSiteProfiles Zinc finger SBP-type profile. 129 206 IPR004333 GO:0003677(InterPro)
Cmu11g1789 256 SUPERFAMILY SBT domain 130 209 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu11g1789 256 Pfam SBP domain 132 205 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1789 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1400 Cmu-Chr3:9259451 Cmu11g1789 Cmu-Chr11:30001815 1.10E-33 dispersed
Cmu05g0032 Cmu-Chr5:442878 Cmu11g1789 Cmu-Chr11:30001815 2.50E-29 dispersed
Cmu11g1789 Cmu-Chr11:30001815 Cmu11g1897 Cmu-Chr11:30975879 5.70E-28 dispersed
Cmu06g0296 Cmu-Chr6:3459113 Cmu11g1789 Cmu-Chr11:30001815 6.90E-30 transposed
Cmu01g2258 Cmu-Chr1:34918188 Cmu11g1789 Cmu-Chr11:30001815 1.10E-30 wgd
Cmu11g1789 Cmu-Chr11:30001815 Cmu07g0294 Cmu-Chr7:2937649 4.20E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7197 PF03110 SBP 3.80E-31 No_clan Cmu TF