Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1798 ATGGGTTTCTTCGCCGCTTGGGGGACGATGGGCTTGTTGCAGAAGGTTGCTTGTTTTGGGTTGTTTACTTTGCTGGTTTCCTCTGTGTCTGTGGCATGCTTGGTTAAGGAAAGAGGGGAAGATGGAGATATTGATATGTTTTTGGGCTTGGGTGTGAGCTTTAAGTGGATAACAATGGAGGGATCATCTGATCACCTTAGGAACCAGGATGATATATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCGTTCTCATAAATGGAGTGATATTAGCTTGAGGCAATGGTTGGATAAGCCAGGAAGATCCGTGGATGCTCTTGAATGTCTTCATATATTTAGGCAAATAGTGGAGATTGTTAATATTGCTCATACTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCGTGCTTTGTGATGTCTTCTTTCAACCATGTAACTTTTATTGAGTCGGCATCATGTTCAGATTCTGGCTCTGATTCTCTTGAGGATGGCCTAAATAGTCAAATGGCAGAGGTTAAACCATCATCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTCCGATCTGTTATGACCCCCATAAACGCATTGTCGGAAACTAGTTGCATGCAGTCAAGTTCAGTATATGCTGCCCAAGTATCGTTAAATGAAGGGTCTGGAAAATGTAGAAAAAAAGATAGAAGACATATTGATGAAACAGAAGATAAGATGCAATCATTTCCCATGAAACAGATATTGGCCATGGAGACTACATGGTACACTAGCCCAGAAGAGGCTTCTGATGGCCCAAGTTCAAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAACTATGTCCAGCTTGAGGCATAGAGTGCTTCCTACTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAACTAATCGACCTAAGCTAAGCGATATATTGCAGAGTGAATTTCTCAATGAACCTAAAGATGACCTAGAAGAACGTGAAGCAGCAATCAAGCTTCGAAAAAAAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGCTGCAAGATACTATTTCATTTTTGTGCAGTGATATTGAACAAGTTATGAGGCACCAAACTAATTTCAAGAAAAAGATTGGGTCACGCACAGATCTTGTGAAGGACAATCATTTGCCATTAAATCTCCCTTCAATGCCTCCTGTCAGGAATACTGATTCTGCTGGTTTGGGATCAAGGAAACGATTTAGGCCAGGAATTTTGACCCATGATATAGAAGCATGCGGTGATAATCTCGATGACTGTGAGAAGTCGAATCCAGACAATGAAAATCAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTGGCATATTTTTTGATGAGAGGTAGAGTAAACAAGCCATCAAGGCAGTTTGTTAAACACTCGTCAATAAGTAGCGATGGTAGGGGGTCCGTAGTTTTGACTGAAAGAAGTTCAGTTAATAATTTGGCTTCAAAAGAGAGTTGCAATGATAATAGACAAGGTGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACTTAGTATGTTCTCTCAGTTTTGATCGCGATGGAGAATTTTTTGCCACAGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTGTGGGATGTCACGAGAAGTCAAGTGGTCACTGAAATGGGAGAACATGAGAGGCGCGTATGGTCCATTGACTTCTCATCAGCAGATCCTACAATTTTGGCTAGTGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGAACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAGTTTCCTGTGGATTCTGGTCGGTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGATATGCGGAATATAAGAGTACCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGACTCGAGCACTCTTGTTTCTGCATCCACTGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGGGTTGTTGATTCTCCTGTCCAGTCCTTCACGGGCCACATGAATATCAAGAACTTTGTGGGGCTGTCCGTCTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTCATTTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCGAATCATGAAATGGACGACTCCGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAAATTTTGGAAATGGTTTAG 2685 41.6 MGFFAAWGTMGLLQKVACFGLFTLLVSSVSVACLVKERGEDGDIDMFLGLGVSFKWITMEGSSDHLRNQDDISGVCEEDILADPYVRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIVNIAHTQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQMAEVKPSSSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAAQVSLNEGSGKCRKKDRRHIDETEDKMQSFPMKQILAMETTWYTSPEEASDGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSDILQSEFLNEPKDDLEEREAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKKKIGSRTDLVKDNHLPLNLPSMPPVRNTDSAGLGSRKRFRPGILTHDIEACGDNLDDCEKSNPDNENQQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPSRQFVKHSSISSDGRGSVVLTERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSSTLVSASTDNTLKLWDLSMCTSRVVDSPVQSFTGHMNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSNHEMDDSAQFISSVCWRGQSSSLVAANSTGHIKILEMV 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30113162 30121292 - CmPI595203_11g017980.1 Cmu11g1798 430320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1798 894 ProSiteProfiles Protein kinase domain profile. 1 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1798 894 Pfam WD domain, G-beta repeat 670 706 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 Pfam WD domain, G-beta repeat 585 612 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 Pfam WD domain, G-beta repeat 755 790 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 ProSitePatterns Trp-Asp (WD) repeats signature. 777 791 IPR019775 -
Cmu11g1798 894 SUPERFAMILY WD40 repeat-like 582 891 IPR036322 GO:0005515(InterPro)
Cmu11g1798 894 PRINTS G protein beta WD-40 repeat signature 693 707 IPR020472 -
Cmu11g1798 894 PRINTS G protein beta WD-40 repeat signature 777 791 IPR020472 -
Cmu11g1798 894 PRINTS G protein beta WD-40 repeat signature 650 664 IPR020472 -
Cmu11g1798 894 Gene3D Transferase(Phosphotransferase) domain 1 92 355 - -
Cmu11g1798 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 759 792 - -
Cmu11g1798 894 SMART serkin_6 42 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1798 894 Coils Coil 349 369 - -
Cmu11g1798 894 Gene3D - 559 894 IPR015943 GO:0005515(InterPro)
Cmu11g1798 894 SUPERFAMILY Protein kinase-like (PK-like) 91 356 IPR011009 -
Cmu11g1798 894 MobiDBLite consensus disorder prediction 425 447 - -
Cmu11g1798 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 673 710 - -
Cmu11g1798 894 SMART WD40_4 709 748 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 SMART WD40_4 853 892 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 SMART WD40_4 666 706 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 SMART WD40_4 799 838 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 SMART WD40_4 624 663 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 SMART WD40_4 578 613 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 SMART WD40_4 752 790 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 715 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 556 894 - -
Cmu11g1798 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 759 792 IPR001680 GO:0005515(InterPro)
Cmu11g1798 894 PANTHER PROTEIN SPA1-RELATED 2 86 894 IPR044630 GO:0009640(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1798 K26557 - - csv:101205812 1577.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0197 Cmu-Chr1:1920509 Cmu11g1798 Cmu-Chr11:30113162 1.20E-161 dispersed
Cmu02g1801 Cmu-Chr2:31904011 Cmu11g1798 Cmu-Chr11:30113162 1.40E-97 dispersed
Cmu09g1283 Cmu-Chr9:16669443 Cmu11g1798 Cmu-Chr11:30113162 1.10E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .