Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1836 ATGAATGAGAAGGCCAACGTTACCAAGGAGCTCAACGCCCGCCACAGAAAGATATTAGAAGGGCTTCTTAAGCTGCCAGAAAATAGGGAGTGTGCTGATTGCAAAGCTAAGGGACCACGATGGGCTAGTGTTAATTTAGGCATTTTTATATGTATGCAATGTTCTGGGATCCACAGAAGTCTTGGTGTTCACATATCAAAGGTACGGTCTGCTACCTTGGACACTTGGCTTCCAGAGCAGGTTACTTTTATACAATCAATGGGGAATGAGAAGGCAAACAGTTATTGGGAGGCGGAGCTACCACCAAATTATGATAGAGTTGGGATTGAGAATTTTATTCGTGCAAAATATGAAGACAAGAGATGGGTTCCTAAGGATGGCAAACCAAGATCACCATCTCGAGTACAGGAGGAAAAGCCTTCTTTGCATGGGCATAGGCCTGCAGAAAGAAGTGGGTCAGGGTATTCAGGCCATTCTGAAAATTTGTTTGAGGAAAGGAAAAGGGTTCAAGCTCATAGTGTGAAGGAGAGTATACCTGCCTCGAGAGTTAGTCTTCCTGTTCCTCCCAGAGGACCTGAACAAGTTGCTCCAGCGCCCAAACCACGCCAGGAGCAAAAACCTGAACCAGTTGTACAGCAAGCTGAAGCAACGAAACAGACTATAAATGATGCCCCAGCTGTCTCTCCTCGAAAAGTTGATTATGCTACTGATCTTTTTAACATGCTATCCTTTGATGGACCCTCTGACAATGGTTCGGCAGCTGTTTCTACAGATGATAGTGCATGGGCTGGCTTCCAGTCTGCTGAAGAAGCATCATCAGCAGAGAAACCTGGTCCAGCAAAACCAGCTGAAGCCATTACCCAATCCACTTCTGGAATTGAGGATCTTTTCAAAGATACAACTACAGTTTCACCTTCTATAGTTCCCGAAAAACCTGTGAAAGATGTTAAAACTGATATAATGAGTCTTTTTGAAAAGTCCAGTATGGTCTCTCCATTTGCTATGCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCCGCTGCAGCTAAATCAGCTGCTGGAGACACAAAATTTAGCAATACTTCTCATCAACAGCAACTTGCCATGCTAGCTCAGCAACAATCACTTCTCATGGCTGCTGCAGCTAAGTCAGCTGCTGGGGACGCAAAATTTAGCAGTACTCAAGCCTCTGTCCCCAATGGTACCAATGTTCCTCCTCAAAGTTGGCCAAATGTTGCCTACCCGATTCCTGGACTGATGATGCAAATAGGTGCCCAGGGTGGGCCACAAACTACTGTGCAGGCAATGAACAGGGGGCTGGCAAATCCAGTTGGGAGTTCTGTTCCATATCCAACATCTAGCCTTTATAGCCTGGGGCAAGCTTCTTCAGTGCCGGCGAATGGTGTGACCCCCATAGCAAAAAATAAACCTCAATCGACAGCGTCGGTATCATCAGCTACTCCTTCACAGTCGGGAAAAGAGTACGATTTCTCCTCTTTAACACAAGGGTAG 1530 45.88 MNEKANVTKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVPKDGKPRSPSRVQEEKPSLHGHRPAERSGSGYSGHSENLFEERKRVQAHSVKESIPASRVSLPVPPRGPEQVAPAPKPRQEQKPEPVVQQAEATKQTINDAPAVSPRKVDYATDLFNMLSFDGPSDNGSAAVSTDDSAWAGFQSAEEASSAEKPGPAKPAEAITQSTSGIEDLFKDTTTVSPSIVPEKPVKDVKTDIMSLFEKSSMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAAGDTKFSNTSHQQQLAMLAQQQSLLMAAAAKSAAGDAKFSSTQASVPNGTNVPPQSWPNVAYPIPGLMMQIGAQGGPQTTVQAMNRGLANPVGSSVPYPTSSLYSLGQASSVPANGVTPIAKNKPQSTASVSSATPSQSGKEYDFSSLTQG 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30523876 30529659 + CmPI595203_11g018360.1 Cmu11g1836 430358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1836 509 MobiDBLite consensus disorder prediction 123 146 - -
Cmu11g1836 509 MobiDBLite consensus disorder prediction 472 509 - -
Cmu11g1836 509 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096(InterPro)
Cmu11g1836 509 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Cmu11g1836 509 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096(InterPro)
Cmu11g1836 509 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096(InterPro)
Cmu11g1836 509 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096(InterPro)
Cmu11g1836 509 MobiDBLite consensus disorder prediction 265 293 - -
Cmu11g1836 509 SUPERFAMILY ArfGap/RecO-like zinc finger 15 125 IPR037278 -
Cmu11g1836 509 MobiDBLite consensus disorder prediction 210 224 - -
Cmu11g1836 509 Pfam Putative GTPase activating protein for Arf 17 124 IPR001164 GO:0005096(InterPro)
Cmu11g1836 509 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Cmu11g1836 509 CDD ArfGap 19 117 - -
Cmu11g1836 509 MobiDBLite consensus disorder prediction 123 228 - -
Cmu11g1836 509 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 365 IPR044520 GO:0005096(InterPro)
Cmu11g1836 509 SMART arf_gap_3 16 130 IPR001164 GO:0005096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1836 K12486 - - csv:101214277 843.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1451 Cmu-Chr1:28061299 Cmu11g1836 Cmu-Chr11:30523876 2.90E-57 dispersed
Cmu07g1169 Cmu-Chr7:26965409 Cmu11g1836 Cmu-Chr11:30523876 5.60E-22 dispersed
Cmu10g1009 Cmu-Chr10:2074993 Cmu11g1836 Cmu-Chr11:30523876 7.10E-17 dispersed
Cmu10g2816 Cmu-Chr10:34711806 Cmu11g1836 Cmu-Chr11:30523876 2.40E-18 dispersed
Cmu11g1836 Cmu-Chr11:30523876 Cmu01g2459 Cmu-Chr1:36550089 1.50E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g290 . . . . . . . . . . . . Car01g01000 . . Cpe06g00717 Cpe02g00724 . . . . . . . Cla11g01802 Cam11g1868 Cec11g1892 Cco11g1898 Clacu11g2031 Cmu11g1836 Cre11g2243 Cone6ag0115 Cone9ag0133 . . Lsi04g01282 . . . . . . . Bpe11g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .