Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1838 ATGGAGGTTTGTTTCTCAACGGAATTGCCCTCTTTCGATTTGCGGATTGCTGTTGCAGAAGAGGCTGGTGTTTTTTGGGTTGAGAGTGTGGTGAATTTGGGGTGGAATTCTGTGAAATTTTGGAATTTGAAGTACTGGGGTTTTGGCAAAATGATGTTATCCGCGTCGCCTTCGGCAATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCGCCGGTGAAGCGGGCTTTACCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAATGTCTTTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAATAAAGGGAGATCAAGACGATGAATCGCCTTACATGGTAGCTTCAGAAAATGATAATAGAGATCAAGTGTATGGCTCGAATGGTGCAAATATTCAAGGGTCTAACTGGGAGGACAATATCAGTTATTTTCTTCATAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTAGGAACTATACAGTCAAACAGTGGGGTGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACAGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGCACAGCTCGGTTATTTGAATGAGCCTTCGGTTATTCACAGTCTCCAGAGAAGATTTTCTCGGGATAAAATTTATAGTAATGCTGGGTCAGTTTTGATTGCAGTCAATCCCTTGAAAGACACTAAACAGTATGGAAATGGATTAATTACAGCCTATAGACAGAGAGTCATGAATGACCCTCATGTTTATGCTATAGCTGATTCTGCCTATTCTGCGATGATGCAAGATGAAGTTAATCAATCTATTATCATCAGTGGAGAAAGTGGAGCTGGAAAAACTGAGACAGCAAAAGCTGCAGTTCAATACCTGGCTGCTCTTGGTGGCGGCAGTGGCATAGATGATAGAATCCCACAGGCGAATGTTATACTGGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCTAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACATTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTTTATCAACTTTGTGCTGGAGCATCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCTAGTGAGTACAGTTACCTTAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATATTCTTGTGGAAGCCCTAGATACACTTCAATTCACAAAAGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCGGTGTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCGACCCACAAAGTGCAATCAGGCAACGGCAGCATTGCTAAAAAATTGACATTACGCCAGGCAACCAATGCAAGAGATGCTTTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAACGGAGCATTCTGGAAGATCCATAAATATTCTTGACTTCTATGGGTTTGAGTCATTTAAGAAGAATGGCTTCGAACAGTTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATGAGGCACCTGTTCAAACTTCAGCAGGAGGACTATGAATTTAATGGGGTCGATGGCACAAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAACCTCTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTCCCAAGGCTACAGATCTTACATTTGCTAATAAACTAAAGCAACACTTTAAGTCTCAACCTTGCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTATTCGCCATTATGCTGGAGAGGTTGTATATGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTGCTGCATTCCGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAACTGATTAACCATTCCCAGAAACCAACAGTTTCAATGTGCTCTACAGAAGTAGTAGAATCCCCCGAGCCAGGTGTTGGTACCAAGTACAAGCTTCTACTATTTGACCTATTTCATAAATTGGAGTACACCAGCCATCATTTCATTTGTTGCATAAGGCCGAACAGAAATCAAGTTGGTGGCTTATTTGAGGAGGACCTTGTCCTACAACAGCTTCGGTACTGTGGAATTTTGGAAGTTGTGAGAATTTCAAGATCTGGATATCCTACCAGAATGATGCATCACGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACTGGTGCATCTCGAGATCCATTGAGTATATCAATTGCTGTTCTACAACAATTTAATGTCCACCCCGAGATGTACCACGTTGGTTATACCAAACTATTTTTCCGAACTGGGCAGATTAGGGCATTGGATGAAAGGAGGAAGCAAGTTATGCAAGGCATCCTAGGGGTACAAAAGTACTTTCGTGGTTGCCATTCCCGTGGCAACTTCCATGATCTTAAGCAAGGGGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGAAGGAGATGTACCATTAAGGTGAAGAGGTTCTCATTCGTTGTGTATGCTTTTAGCGTTCCTAAGAAGGCTTACGAACTCCAGGGAATCATACGTTTACAATCTGTCATACGTGGTTCATTGGCTCGAAAGCATTTTCGGAGCATGCGTGATTCAAAGAGGGATTTTCCTGAAAACAAGAAATCTAAACTGACAACAGGCGGAAGGGTTTCAGAGGAAGAATTTCAAGAACGGGTTCAATCCTTGCCAACAACTCTGACTGAGCTTCAAAAGAGGGTCCTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATGCTGCAATGCGGGAGCAAGTAAAACAATTCGAGTCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTAACCTGTCCACCAGGAAGAATTGATGCTGGTAACTCACCACCTCACTATTATGATTCTGAGGATACAACGTCAATGGGATCCCGAACACCTGGTGGTACCACACCTATAAAGGCTTCTGGAATTTCTGAAGTTGGAGCAGGCCGAGAAATGAATGGTACTTTAGTGGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGAAGAACTGCATTTGACGATGATGCCAAAGCTTTAATTGAAGCAAAATCAGGTCAGGCACAGACAGGGTCTAATTTAAATCCAGATGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCATGGAAAAAAGAGTACAAGGCTAGATTAAGGGAAACAAAAGCTAAGTTCAGCTTTGTGAATGAATGGAGAGCTCTTGAAAAGAAGGGGGAGAAAACTGTTGAGTTGTCTTCTGACAACATGTGGGTGTTGAAGCTCAACCTGATAAAGCCGAGAAATGTGTCGCCCGTTCGTGGGATGGAAGGAGAGTGTTCAGAAGATTGTGTATAG 3864 42.05 MEVCFSTELPSFDLRIAVAEEAGVFWVESVVNLGWNSVKFWNLKYWGFGKMMLSASPSAIARSSLEEMLDSLRRRDEIEKPKDLPPALPSRPTSKARIPPVKRALPVNFRVNDDGSSECSINVFNGREDAMRKENGLGNFAFRRIKGDQDDESPYMVASENDNRDQVYGSNGANIQGSNWEDNISYFLHKKLRVWCQLPTGQWELGTIQSNSGVEASVMLSNKKVVKVSTVDLLPANPDIVEGVDDLAQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNGLITAYRQRVMNDPHVYAIADSAYSAMMQDEVNQSIIISGESGAGKTETAKAAVQYLAALGGGSGIDDRIPQANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGASSTLKEKLNIRVASEYSYLNHSECLVIGGVDDARKFHILVEALDTLQFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSTHKVQSGNGSIAKKLTLRQATNARDALAKFIYASLFDWLVEQINKSLKPRTEHSGRSINILDFYGFESFKKNGFEQFCINYANERLQQHFMRHLFKLQQEDYEFNGVDGTKVNFEDNQECLNLIEKKPLGVLALLDEELNFPKATDLTFANKLKQHFKSQPCFKGERGRAFGIRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLLASKLINHSQKPTVSMCSTEVVESPEPGVGTKYKLLLFDLFHKLEYTSHHFICCIRPNRNQVGGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMMHHEFAGRYGFLLKETGASRDPLSISIAVLQQFNVHPEMYHVGYTKLFFRTGQIRALDERRKQVMQGILGVQKYFRGCHSRGNFHDLKQGATTLQSFIRGENARRRCTIKVKRFSFVVYAFSVPKKAYELQGIIRLQSVIRGSLARKHFRSMRDSKRDFPENKKSKLTTGGRVSEEEFQERVQSLPTTLTELQKRVLEAEATIEKKEGENAAMREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENVTCPPGRIDAGNSPPHYYDSEDTTSMGSRTPGGTTPIKASGISEVGAGREMNGTLVAVNNLVKEFEQRRTAFDDDAKALIEAKSGQAQTGSNLNPDEEYRKIKVRFEAWKKEYKARLRETKAKFSFVNEWRALEKKGEKTVELSSDNMWVLKLNLIKPRNVSPVRGMEGECSEDCV 1287
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 30550965 30561496 + CmPI595203_11g018380.1 Cmu11g1838 430360
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1838 1287 Gene3D - 919 964 - -
Cmu11g1838 1287 Gene3D - 612 803 - -
Cmu11g1838 1287 Pfam Myosin head (motor domain) 244 901 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 Gene3D Kinesin motor domain 241 846 IPR036961 -
Cmu11g1838 1287 PRINTS Myosin heavy chain signature 653 681 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 PRINTS Myosin heavy chain signature 600 628 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 PRINTS Myosin heavy chain signature 368 395 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 PRINTS Myosin heavy chain signature 326 351 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 PRINTS Myosin heavy chain signature 272 291 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 Gene3D Myosin VI head, motor domain, U50 subdomain 481 589 - -
Cmu11g1838 1287 PANTHER MYOSIN 193 1250 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Cmu11g1838 1287 ProSiteProfiles IQ motif profile. 980 1009 - -
Cmu11g1838 1287 MobiDBLite consensus disorder prediction 76 96 - -
Cmu11g1838 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 962 IPR027417 -
Cmu11g1838 1287 SMART iq_5 979 1001 IPR000048 GO:0005515(InterPro)
Cmu11g1838 1287 SMART iq_5 914 936 IPR000048 GO:0005515(InterPro)
Cmu11g1838 1287 SMART iq_5 937 959 IPR000048 GO:0005515(InterPro)
Cmu11g1838 1287 MobiDBLite consensus disorder prediction 1002 1029 - -
Cmu11g1838 1287 Gene3D - 424 480 - -
Cmu11g1838 1287 Pfam IQ calmodulin-binding motif 941 958 IPR000048 GO:0005515(InterPro)
Cmu11g1838 1287 Pfam IQ calmodulin-binding motif 983 1001 IPR000048 GO:0005515(InterPro)
Cmu11g1838 1287 ProSiteProfiles Myosin motor domain profile. 242 913 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 CDD MYSc_Myo8 256 901 IPR036022 -
Cmu11g1838 1287 FunFam Myosin IE heavy chain 481 589 - -
Cmu11g1838 1287 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 189 238 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 Coils Coil 1040 1088 - -
Cmu11g1838 1287 ProSiteProfiles IQ motif profile. 938 966 - -
Cmu11g1838 1287 SMART MYSc_2a 236 914 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cmu11g1838 1287 FunFam Myosin heavy chain 424 480 - -
Cmu11g1838 1287 Gene3D - 847 914 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1410 Cmu-Chr2:27830108 Cmu11g1838 Cmu-Chr11:30550965 6.50E-308 dispersed
Cmu06g0131 Cmu-Chr6:1279213 Cmu11g1838 Cmu-Chr11:30550965 3.30E-144 dispersed
Cmu09g0773 Cmu-Chr9:7370205 Cmu11g1838 Cmu-Chr11:30550965 1.10E-136 dispersed
Cmu11g1838 Cmu-Chr11:30550965 Cmu05g0405 Cmu-Chr5:3425302 4.50E-150 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1838 K10357 - csv:101210624 2099.71