Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1856 ATGGAGAATTTGGAATTTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCAACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGCTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTTCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTACTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAATCCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATTGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGGGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGGGTCCAGTTGGGTTCTTCTAGCAATTTCTGGATATCCTGTGATAGAGATATTTGAATAG 1740 44.94 MENLEFGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFRRLVFAIHDLGIALLDGFFSHSFEVKEMARSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKIPPIPIHRPITRKFAAQLANKQQPPVPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAGTGKLTGVHRKYCTSKFGYAARNSGSSWVLLAISGYPVIEIFE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30695713 30701454 - CmPI595203_11g018560.1 Cmu11g1856 430378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1856 579 SMART Cyclin_C_2 445 562 IPR004367 -
Cmu11g1856 579 SUPERFAMILY Cyclin-like 444 558 IPR036915 -
Cmu11g1856 579 Gene3D - 317 556 - -
Cmu11g1856 579 Pfam Cyclin, C-terminal domain 445 557 IPR004367 -
Cmu11g1856 579 Pfam Cyclin, N-terminal domain 317 443 IPR006671 -
Cmu11g1856 579 SUPERFAMILY Cyclin-like 307 442 IPR036915 -
Cmu11g1856 579 FunFam G2/mitotic-specific cyclin-1 422 557 - -
Cmu11g1856 579 ProSitePatterns Cyclins signature. 347 378 IPR048258 -
Cmu11g1856 579 MobiDBLite consensus disorder prediction 224 261 - -
Cmu11g1856 579 CDD CYCLIN_AtCycB-like_rpt1 296 440 - -
Cmu11g1856 579 PANTHER CYCLINS 293 549 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu11g1856 579 MobiDBLite consensus disorder prediction 239 260 - -
Cmu11g1856 579 CDD CYCLIN_AtCycB-like_rpt2 445 558 - -
Cmu11g1856 579 SMART cyclin_7 352 436 IPR013763 -
Cmu11g1856 579 SMART cyclin_7 449 531 IPR013763 -
Cmu11g1856 579 Gene3D - 331 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1856 K21777 - - csv:101223199 754.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2031 Cmu-Chr1:33398220 Cmu11g1856 Cmu-Chr11:30695713 3.60E-131 dispersed
Cmu01g2035 Cmu-Chr1:33421821 Cmu11g1856 Cmu-Chr11:30695713 5.70E-36 dispersed
Cmu04g0623 Cmu-Chr4:19952342 Cmu11g1856 Cmu-Chr11:30695713 2.00E-68 dispersed
Cmu09g0226 Cmu-Chr9:2348197 Cmu11g1856 Cmu-Chr11:30695713 9.10E-46 dispersed
Cmu09g2173 Cmu-Chr9:37826770 Cmu11g1856 Cmu-Chr11:30695713 5.30E-48 dispersed
Cmu11g1856 Cmu-Chr11:30695713 Cmu05g1751 Cmu-Chr5:27610905 5.50E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2220 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.7 2.1e-151 531.9
Cmu04g0659 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.6e-96 347.1
Cmu11g1887 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.4e-93 338.6
Cmu04g0659 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Cmu11g1887 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.3e-118 420.2
Cmu05g2220 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 1.8e-92 336.3
Cmu04g0659 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.7e-123 438.3
Cmu11g1887 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.9e-93 338.6
Cmu11g1887 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cmu04g0659 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.5e-118 420.2
Cmu05g2220 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.5e-94 340.5
Cmu11g1887 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.5e-160 560.8
Cmu04g0659 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.5e-120 428.3
Cmu05g2220 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.4e-97 351.3
Cmu02g2396 . 58 572 Core Cell Cycle Gene Families AT5G10270 75.7 4.8e-220 760.8
Cmu10g2170 . 20 481 Core Cell Cycle Gene Families AT5G10270 77.3 2.2e-209 725.3
Cmu03g2235 . 848 1166 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Cmu05g1044 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Cmu05g0636 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.9e-97 352.4
Cmu03g0999 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 8.7e-97 351.3
Cmu11g0057 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.3e-96 349.0
Cmu08g0078 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.7 7.4e-96 348.2
Cmu02g1753 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.0 3.1e-94 342.8
Cmu02g1621 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 5.3e-94 342.0
Cmu04g1243 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Cmu02g2396 . 122 571 Core Cell Cycle Gene Families AT5G64960 72.9 3.7e-179 624.8
Cmu10g2170 . 84 534 Core Cell Cycle Gene Families AT5G64960 70.9 2.6e-172 602.1
Cmu05g1044 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cmu03g0999 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 3.6e-81 299.3
Cmu03g2235 . 902 1166 Core Cell Cycle Gene Families AT5G64960 50.7 8.0e-81 298.1
Cmu02g1753 . 247 509 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cmu11g0057 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cmu05g0636 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Cmu08g0078 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 3.9e-80 295.8
Cmu02g1752 . 182 444 Core Cell Cycle Gene Families AT5G64960 52.9 3.3e-79 292.7
Cmu06g1507 . 8 414 Core Cell Cycle Gene Families AT1G73690 74.7 6.5e-172 600.5
Cmu06g1507 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.2e-155 545.4
Cmu06g1507 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 4.0e-174 607.8
Cmu04g0183 . 32 478 Core Cell Cycle Gene Families AT5G63610 78.9 7.1e-202 700.3
Cmu11g0226 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.4 2.0e-175 612.5
Cmu08g0545 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.8 2.7e-145 512.3
Cmu09g0226 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.4e-88 323.9
Cmu05g1751 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.4 1.5e-84 310.5
Cmu05g2098 . 297 576 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Cmu08g1563 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.7e-78 290.4
Cmu08g1228 . 286 547 Core Cell Cycle Gene Families AT1G44110 53.4 1.3e-75 280.8
Cmu09g0226 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.0e-77 286.2
Cmu05g1751 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.4 2.8e-75 279.6
Cmu05g2098 . 302 574 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Cmu08g1228 . 286 543 Core Cell Cycle Gene Families AT1G77390 50.8 9.7e-68 254.6
Cmu05g1751 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.7 5.4e-119 424.9
Cmu08g1228 . 119 559 Core Cell Cycle Gene Families AT5G25380 51.4 7.1e-103 371.3
Cmu09g0226 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 5.6e-100 361.7
Cmu08g0545 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 4.5e-81 298.9
Cmu05g2098 . 301 569 Core Cell Cycle Gene Families AT5G25380 52.0 2.8e-75 279.6
Cmu02g0698 . 119 344 Core Cell Cycle Gene Families AT5G25380 51.9 1.1e-58 224.6
Cmu05g1751 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.8 1.5e-94 343.6
Cmu08g0545 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Cmu05g2098 . 297 513 Core Cell Cycle Gene Families AT5G11300 55.3 7.4e-62 235.0
Cmu08g1563 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Cmu02g0698 . 119 286 Core Cell Cycle Gene Families AT5G11300 52.1 6.5e-42 168.7
Cmu09g0226 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 2.7e-118 422.5
Cmu08g0545 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.5e-81 299.3
Cmu02g0698 . 119 348 Core Cell Cycle Gene Families AT1G15570 51.1 3.2e-58 223.0
Cmu09g0226 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 2.5e-119 426.0
Cmu08g0545 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.6e-81 300.4
Cmu05g2098 . 297 574 Core Cell Cycle Gene Families AT1G80370 51.4 9.1e-77 284.6
Cmu08g1563 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Cmu02g0698 . 119 349 Core Cell Cycle Gene Families AT1G80370 51.7 2.8e-57 219.9
Cmu08g1563 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 8.4e-115 410.6
Cmu05g2098 . 204 577 Core Cell Cycle Gene Families AT5G43080 57.2 1.3e-112 403.3
Cmu08g0545 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 2.5e-79 292.7
Cmu05g1751 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.7e-79 291.6
Cmu09g0226 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 5.9e-76 281.6
Cmu08g1228 . 283 561 Core Cell Cycle Gene Families AT5G43080 50.4 1.6e-73 273.5
Cmu08g1563 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 4.7e-124 441.4
Cmu05g2098 . 204 577 Core Cell Cycle Gene Families AT1G47210 54.4 1.1e-112 403.7
Cmu09g0226 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 7.4e-77 284.6
Cmu05g1751 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.3e-76 283.9
Cmu08g1228 . 283 549 Core Cell Cycle Gene Families AT1G47210 50.6 6.0e-71 265.0
Cmu05g2098 . 297 578 Core Cell Cycle Gene Families AT1G47220 59.2 4.0e-95 345.1
Cmu08g1563 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.4e-93 337.8
Cmu05g1751 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 6.3e-72 268.1
Cmu05g2098 . 204 577 Core Cell Cycle Gene Families AT1G47230 57.1 2.8e-116 415.6
Cmu08g1563 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 1.2e-114 410.2
Cmu02g0698 . 66 352 Core Cell Cycle Gene Families AT1G47230 54.0 1.1e-77 287.3
Cmu08g0545 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.2e-76 283.9
Cmu09g0226 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.3e-73 273.9
Cmu05g1751 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Cmu04g0623 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 9.3e-116 414.1
Cmu04g0623 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 6.9e-82 301.2
Cmu02g2241 . 847 1049 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Cmu01g2031 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.0e-45 181.0
Cmu04g0623 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.9e-105 378.6
Cmu01g2031 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 6.9e-62 235.0
Cmu02g2241 . 758 1156 Core Cell Cycle Gene Families AT2G26760 53.3 2.4e-107 386.0
Cmu01g2031 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 4.7e-128 454.9
Cmu11g1856 . 167 566 Core Cell Cycle Gene Families AT2G17620 52.2 7.4e-105 377.9
Cmu01g2031 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.1e-103 372.9
Cmu11g1856 . 160 523 Core Cell Cycle Gene Families AT4G35620 53.4 1.3e-89 327.0
Cmu02g2241 . 882 1108 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Cmu11g1856 . 131 566 Core Cell Cycle Gene Families AT1G20610 63.1 1.2e-142 503.4
Cmu01g2031 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 3.0e-122 435.6
Cmu11g1856 . 131 463 Core Cell Cycle Gene Families AT1G76310 63.8 1.7e-104 376.3
Cmu01g2031 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 6.9e-82 301.2
Cmu02g2241 . 878 1045 Core Cell Cycle Gene Families AT1G76310 52.4 5.9e-41 165.2
Cmu09g1973 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.2e-111 398.7
Cmu05g2557 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.5e-105 378.3
Cmu01g1791 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 3.9e-83 305.4
Cmu05g1129 . 14 336 Core Cell Cycle Gene Families AT4G34160 52.4 6.1e-79 291.6
Cmu08g1552 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.5 9.1e-67 251.1
Cmu02g0662 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.6e-61 233.0
Cmu05g2087 . 71 318 Core Cell Cycle Gene Families AT5G67260 51.4 5.4e-65 245.4
Cmu01g1791 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Cmu08g1090 . 131 330 Core Cell Cycle Gene Families AT5G65420 55.9 5.4e-61 231.5
Cmu01g1791 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.3e-56 214.2
Cmu08g1090 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 9.3e-51 197.2
Cmu01g1601 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.1 4.3e-104 374.8
Cmu01g1347 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.4e-44 172.9
Cmu02g2156 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.1e-42 169.1
Cmu01g1347 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Cmu02g2156 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.0e-39 157.1
Cmu05g2744 . 283 1301 Core Cell Cycle Gene Families AT3G12280 71.9 0.0e+00 1411.7
Cmu09g0583 . 2 486 Core Cell Cycle Gene Families AT1G02970 59.9 1.2e-159 560.1