Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1856 ATGGAGAATTTGGAATTTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCAACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGCTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTTCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTACTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAATCCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATTGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGGGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGGGTCCAGTTGGGTTCTTCTAGCAATTTCTGGATATCCTGTGATAGAGATATTTGAATAG 1740 44.94 MENLEFGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFRRLVFAIHDLGIALLDGFFSHSFEVKEMARSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKIPPIPIHRPITRKFAAQLANKQQPPVPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAGTGKLTGVHRKYCTSKFGYAARNSGSSWVLLAISGYPVIEIFE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30695713 30701454 - CmPI595203_11g018560.1 Cmu11g1856 430378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1856 579 SMART Cyclin_C_2 445 562 IPR004367 -
Cmu11g1856 579 SUPERFAMILY Cyclin-like 444 558 IPR036915 -
Cmu11g1856 579 Gene3D - 317 556 - -
Cmu11g1856 579 Pfam Cyclin, C-terminal domain 445 557 IPR004367 -
Cmu11g1856 579 Pfam Cyclin, N-terminal domain 317 443 IPR006671 -
Cmu11g1856 579 SUPERFAMILY Cyclin-like 307 442 IPR036915 -
Cmu11g1856 579 FunFam G2/mitotic-specific cyclin-1 422 557 - -
Cmu11g1856 579 ProSitePatterns Cyclins signature. 347 378 IPR048258 -
Cmu11g1856 579 MobiDBLite consensus disorder prediction 224 261 - -
Cmu11g1856 579 CDD CYCLIN_AtCycB-like_rpt1 296 440 - -
Cmu11g1856 579 PANTHER CYCLINS 293 549 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu11g1856 579 MobiDBLite consensus disorder prediction 239 260 - -
Cmu11g1856 579 CDD CYCLIN_AtCycB-like_rpt2 445 558 - -
Cmu11g1856 579 SMART cyclin_7 352 436 IPR013763 -
Cmu11g1856 579 SMART cyclin_7 449 531 IPR013763 -
Cmu11g1856 579 Gene3D - 331 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2031 Cmu-Chr1:33398220 Cmu11g1856 Cmu-Chr11:30695713 3.60E-131 dispersed
Cmu01g2035 Cmu-Chr1:33421821 Cmu11g1856 Cmu-Chr11:30695713 5.70E-36 dispersed
Cmu04g0623 Cmu-Chr4:19952342 Cmu11g1856 Cmu-Chr11:30695713 2.00E-68 dispersed
Cmu09g0226 Cmu-Chr9:2348197 Cmu11g1856 Cmu-Chr11:30695713 9.10E-46 dispersed
Cmu09g2173 Cmu-Chr9:37826770 Cmu11g1856 Cmu-Chr11:30695713 5.30E-48 dispersed
Cmu11g1856 Cmu-Chr11:30695713 Cmu05g1751 Cmu-Chr5:27610905 5.50E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1856 K21777 - csv:101223199 754.977