Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1861 ATGATTTCCGGATTTCAGATCCGATTAGATCCACTCGCGCTTGAAGCTTCCTTCGATAGATCTGAAAGGACCTTGATGTTAACGTCGCCGGAGCCAAGTTTGATGCAGTTCTTGATCAAAATTTTGCGCGACGGATTGGGTTCCTCTCTAGAACTTGAAAAGGCGGTTTTCTCTTCCTCACCTAACTCTTGGGAGGAGGAGTTGATCATTGCATGTGATGTGGATGAGGCTTGCAGTGTTGCACCGAACTTGTACAGTGCTTCGTCAGATCTATCTCTGGTTGAACGATCATGTTCGCCTGTGGCGATACTTCTGATCGAATATCCCTATTTATTTACTTTATTTTGTTGGGTTCTTAGAGGTTTGTCTTCGAATCTTCCTGATTCGGAGGGGGAGGCTCATGGGACCAAGCTTTCTCCCTCTGATATGAGCTGTTTTTCTTGCATTCGTGCTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAATGGGAGTGGAAGGGGGAAGTCGTATGCAAATGAAACTGGAAAGGGGAAGGAATCGCAAACAAGAAGTGGAAACAACCGGAAATGTGGAGTTGCACGAAGCTTCCCATTTCGTGAATTGGCGACGGCTACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTACAAAGGCCGATTAGAAACAGGCCAGGTTGTTGCGATCAAACAACTCAATCATGATGGTCTTCAGGGATATCAAGAATTCATTGTCGAAGTTCTTATGTTAAGTTTATTGCATCACTGTAATCTTGTCACGTTGATTGGTTATTGTACTGATGGAGATCAAAGACTGTTGGTCTATGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGTTTGTTGCCTGAACGGCCACCATTGAGTTGGAACACTAGAATCAAGATTGCTCTTGGTGCAGCCCAGGGCCTTGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATCTACCGTGACTTGAAATCTGCAAATATTTTACTCGATGATGACTTCAATCCAAAGCTCTCAGATTTTGGACTGGCAAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTGACCCTTAAATCTGATATTTATTGCTTCGGTGTAGTTCTCTTGGAGCTAATTACAGGTAGGAAAGCTATCGACTCCACCAAGAAACCTGGAGAGCAAAATCTGGTTGCTTGGTCTCGCCCTTTTCTAAAAGACCGGAGGAAGTTCATTCAATTAGTCGACCCACTGCTGGAAGGACGCTACCCTCTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAACCAACATTCCGGCCAATTATCAGTGATATCGTTGTGGCCCTTGAGTACTTAGCTTCTCAGAGTTACTTATCAGAACAACCGAGGGACGGCATGCCTAGTCCGTCCAAGCTATCTCCTCAAGGGGACAGTAGTACCCGTCTCTGTAAGGTGCATTTGCTGGCGTTAGCAAAACCCGACCAACTCCAATCTCCTGTTTAA 1602 45.63 MISGFQIRLDPLALEASFDRSERTLMLTSPEPSLMQFLIKILRDGLGSSLELEKAVFSSSPNSWEEELIIACDVDEACSVAPNLYSASSDLSLVERSCSPVAILLIEYPYLFTLFCWVLRGLSSNLPDSEGEAHGTKLSPSDMSCFSCIRARCKDASKVEIDNGSGRGKSYANETGKGKESQTRSGNNRKCGVARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNHDGLQGYQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLLPERPPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAIDSTKKPGEQNLVAWSRPFLKDRRKFIQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYLSEQPRDGMPSPSKLSPQGDSSTRLCKVHLLALAKPDQLQSPV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30763322 30768236 - CmPI595203_11g018610.1 Cmu11g1861 430383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1861 533 MobiDBLite consensus disorder prediction 492 512 - -
Cmu11g1861 533 MobiDBLite consensus disorder prediction 164 190 - -
Cmu11g1861 533 MobiDBLite consensus disorder prediction 175 190 - -
Cmu11g1861 533 Gene3D Phosphorylase Kinase; domain 1 179 284 - -
Cmu11g1861 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1861 533 SMART serkin_6 209 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1861 533 SUPERFAMILY Protein kinase-like (PK-like) 192 483 IPR011009 -
Cmu11g1861 533 FunFam Serine/threonine-protein kinase PBS1 285 498 - -
Cmu11g1861 533 FunFam probable serine/threonine-protein kinase RLCKVII 179 284 - -
Cmu11g1861 533 ProSiteProfiles Protein kinase domain profile. 209 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1861 533 ProSitePatterns Protein kinases ATP-binding region signature. 215 237 IPR017441 GO:0005524(InterPro)
Cmu11g1861 533 Pfam Protein kinase domain 210 478 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1861 533 CDD STKc_IRAK 215 483 - -
Cmu11g1861 533 Gene3D Transferase(Phosphotransferase) domain 1 285 498 - -
Cmu11g1861 533 PANTHER OS07G0668900 PROTEIN 174 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0807 Cmu-Chr7:20570042 Cmu11g1861 Cmu-Chr11:30763322 1.20E-39 dispersed
Cmu08g0886 Cmu-Chr8:21118481 Cmu11g1861 Cmu-Chr11:30763322 5.20E-153 dispersed
Cmu10g2786 Cmu-Chr10:34455541 Cmu11g1861 Cmu-Chr11:30763322 2.20E-124 dispersed
Cmu11g0534 Cmu-Chr11:5829654 Cmu11g1861 Cmu-Chr11:30763322 2.80E-78 dispersed
Cmu11g1145 Cmu-Chr11:21663836 Cmu11g1861 Cmu-Chr11:30763322 5.40E-83 dispersed
Cmu11g1861 Cmu-Chr11:30763322 Cmu02g0346 Cmu-Chr2:3194748 1.90E-81 wgd
Cmu11g1861 Cmu-Chr11:30763322 Cmu08g0905 Cmu-Chr8:21283577 5.20E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75962 PF00069 Pkinase 9.10E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1861 - - - 0.0