Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g1861 | ATGATTTCCGGATTTCAGATCCGATTAGATCCACTCGCGCTTGAAGCTTCCTTCGATAGATCTGAAAGGACCTTGATGTTAACGTCGCCGGAGCCAAGTTTGATGCAGTTCTTGATCAAAATTTTGCGCGACGGATTGGGTTCCTCTCTAGAACTTGAAAAGGCGGTTTTCTCTTCCTCACCTAACTCTTGGGAGGAGGAGTTGATCATTGCATGTGATGTGGATGAGGCTTGCAGTGTTGCACCGAACTTGTACAGTGCTTCGTCAGATCTATCTCTGGTTGAACGATCATGTTCGCCTGTGGCGATACTTCTGATCGAATATCCCTATTTATTTACTTTATTTTGTTGGGTTCTTAGAGGTTTGTCTTCGAATCTTCCTGATTCGGAGGGGGAGGCTCATGGGACCAAGCTTTCTCCCTCTGATATGAGCTGTTTTTCTTGCATTCGTGCTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAATGGGAGTGGAAGGGGGAAGTCGTATGCAAATGAAACTGGAAAGGGGAAGGAATCGCAAACAAGAAGTGGAAACAACCGGAAATGTGGAGTTGCACGAAGCTTCCCATTTCGTGAATTGGCGACGGCTACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTACAAAGGCCGATTAGAAACAGGCCAGGTTGTTGCGATCAAACAACTCAATCATGATGGTCTTCAGGGATATCAAGAATTCATTGTCGAAGTTCTTATGTTAAGTTTATTGCATCACTGTAATCTTGTCACGTTGATTGGTTATTGTACTGATGGAGATCAAAGACTGTTGGTCTATGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGTTTGTTGCCTGAACGGCCACCATTGAGTTGGAACACTAGAATCAAGATTGCTCTTGGTGCAGCCCAGGGCCTTGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATCTACCGTGACTTGAAATCTGCAAATATTTTACTCGATGATGACTTCAATCCAAAGCTCTCAGATTTTGGACTGGCAAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTGACCCTTAAATCTGATATTTATTGCTTCGGTGTAGTTCTCTTGGAGCTAATTACAGGTAGGAAAGCTATCGACTCCACCAAGAAACCTGGAGAGCAAAATCTGGTTGCTTGGTCTCGCCCTTTTCTAAAAGACCGGAGGAAGTTCATTCAATTAGTCGACCCACTGCTGGAAGGACGCTACCCTCTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAACCAACATTCCGGCCAATTATCAGTGATATCGTTGTGGCCCTTGAGTACTTAGCTTCTCAGAGTTACTTATCAGAACAACCGAGGGACGGCATGCCTAGTCCGTCCAAGCTATCTCCTCAAGGGGACAGTAGTACCCGTCTCTGTAAGGTGCATTTGCTGGCGTTAGCAAAACCCGACCAACTCCAATCTCCTGTTTAA | 1602 | 45.63 | MISGFQIRLDPLALEASFDRSERTLMLTSPEPSLMQFLIKILRDGLGSSLELEKAVFSSSPNSWEEELIIACDVDEACSVAPNLYSASSDLSLVERSCSPVAILLIEYPYLFTLFCWVLRGLSSNLPDSEGEAHGTKLSPSDMSCFSCIRARCKDASKVEIDNGSGRGKSYANETGKGKESQTRSGNNRKCGVARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNHDGLQGYQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLLPERPPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAIDSTKKPGEQNLVAWSRPFLKDRRKFIQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYLSEQPRDGMPSPSKLSPQGDSSTRLCKVHLLALAKPDQLQSPV | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30763322 | 30768236 | - | CmPI595203_11g018610.1 | Cmu11g1861 | 430383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g1861 | 533 | MobiDBLite | consensus disorder prediction | 492 | 512 | - | - | |
Cmu11g1861 | 533 | MobiDBLite | consensus disorder prediction | 164 | 190 | - | - | |
Cmu11g1861 | 533 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
Cmu11g1861 | 533 | Gene3D | Phosphorylase Kinase; domain 1 | 179 | 284 | - | - | |
Cmu11g1861 | 533 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 331 | 343 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1861 | 533 | SMART | serkin_6 | 209 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g1861 | 533 | SUPERFAMILY | Protein kinase-like (PK-like) | 192 | 483 | IPR011009 | - | |
Cmu11g1861 | 533 | FunFam | Serine/threonine-protein kinase PBS1 | 285 | 498 | - | - | |
Cmu11g1861 | 533 | FunFam | probable serine/threonine-protein kinase RLCKVII | 179 | 284 | - | - | |
Cmu11g1861 | 533 | ProSiteProfiles | Protein kinase domain profile. | 209 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g1861 | 533 | ProSitePatterns | Protein kinases ATP-binding region signature. | 215 | 237 | IPR017441 | GO:0005524(InterPro) | |
Cmu11g1861 | 533 | Pfam | Protein kinase domain | 210 | 478 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g1861 | 533 | CDD | STKc_IRAK | 215 | 483 | - | - | |
Cmu11g1861 | 533 | Gene3D | Transferase(Phosphotransferase) domain 1 | 285 | 498 | - | - | |
Cmu11g1861 | 533 | PANTHER | OS07G0668900 PROTEIN | 174 | 497 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu07g0807 | Cmu-Chr7:20570042 | Cmu11g1861 | Cmu-Chr11:30763322 | 1.20E-39 | dispersed | |
Cmu08g0886 | Cmu-Chr8:21118481 | Cmu11g1861 | Cmu-Chr11:30763322 | 5.20E-153 | dispersed | |
Cmu10g2786 | Cmu-Chr10:34455541 | Cmu11g1861 | Cmu-Chr11:30763322 | 2.20E-124 | dispersed | |
Cmu11g0534 | Cmu-Chr11:5829654 | Cmu11g1861 | Cmu-Chr11:30763322 | 2.80E-78 | dispersed | |
Cmu11g1145 | Cmu-Chr11:21663836 | Cmu11g1861 | Cmu-Chr11:30763322 | 5.40E-83 | dispersed | |
Cmu11g1861 | Cmu-Chr11:30763322 | Cmu02g0346 | Cmu-Chr2:3194748 | 1.90E-81 | wgd | |
Cmu11g1861 | Cmu-Chr11:30763322 | Cmu08g0905 | Cmu-Chr8:21283577 | 5.20E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75962 | PF00069 | Pkinase | 9.10E-45 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g1861 | - | - | - | 0.0 |