Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1873 ATGCTGTGGGTTGCGGCTAAGATAGAAAGTGATTCTCCTCCGCTTTACGGCGATCCCGTTTCGCCTCATCCCGAGGTGGGTACCCCATCCAAAAGCCCATTCTCTAAATTTAAGCCCAGGCCCAAATTGGTTATTAAGAAAGTTGAAAGTGGGAGAATTTTGAGAGTGGCTGTGGTGAAACCTAATCGTCGTCCACTGGAAGAGGCCGAGTCCGAGCCGCCCACTAGGGCGGAAGGGCCCACCTGTGGAGTATCGACGAGCGACTGTAGATGCTGTCACTGTTGCTGCACAAAGATTGGGCCTCCAAGTAAAGAACACTCCCCGACTTTTGCTTCATCAACCAATGAAGGAATTTTCTGCTTTTTGTTTTCGAAAAATTTTCACGTGATTTCGCTGAGGTGCGAGTATTTGCCAGCTTCCATCAAACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCGACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTCCCTCTGGTATCATTTTCGGCTACTGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCAGTTGCTGAGATTGTTGAGTATTATAGTTGGAAAGAGGTCATTGCTATATATGTTGATGATGATTATGGGTGGAATGGAGTTGCGACATTGGGTGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTGGATTAGGCGCCTTAGTCTTTTCAGTGGCTAAGTACCTCCAAATGATAGGCAATGGATATGTATGGATAGCAACCGATTGGCTTTCGTCTCTATTAGACAGTGTTGTTCCTCTTCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGACAGCACACAGCAGAATCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCATCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGTGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCCTGCTGAATAACATATTGGAGAGCGATTTTGTTGGTCTGACTGGTGCCATTAAGTTTGATTTGGACAGATCCCTTCTTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGTTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTTCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTCCAGGGTTTCTGCATCGATGTGTTTACAGCTGCTGTAAACTTATTGCCGTATGCTGTCCCCCACCAATTTATAGCCTTTGGTGATGGCCATCACAATCCAAATTACACAGATCTTGTGTACGGGATTACAACCGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGGACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACAGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAAAACACAATTAGCACTCTTGGCCGTCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCATTTGCTGAACGTTATCTGAGCGAGGAGCTGAACATATCTAGATCCAGGCTTGTTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAATGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCACCATGGACAATGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTATTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATATTGCTTTCAGATTATTCGTCAGCTATACCGTGGCGATGCACAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGCTTTCGAAGAATTATATCGATATTGGATGAGAAGAAAGAACCGTCTAAAAGGGGAAGCAAAAGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGACGATGATAATTTGGAGGCTGATCCTTGA 3099 43.69 MLWVAAKIESDSPPLYGDPVSPHPEVGTPSKSPFSKFKPRPKLVIKKVESGRILRVAVVKPNRRPLEEAESEPPTRAEGPTCGVSTSDCRCCHCCCTKIGPPSKEHSPTFASSTNEGIFCFLFSKNFHVISLRCEYLPASIKPSVVNIGAILSFNSTIGKVATIAIEEAVKDVNADPSILPGTDLWLQMQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYSWKEVIAIYVDDDYGWNGVATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPGLGALVFSVAKYLQMIGNGYVWIATDWLSSLLDSVVPLPLEIMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLLHPAYDIINVIGTGSRRVGYWSNYSGLSIDVPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLSEELNISRSRLVPLGSPEEYAKALELGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYRGDAQESDLSSSSGSHSNRFRRIISILDEKKEPSKRGSKRRKVEKSSENDKDDDNLEADP 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30832073 30841007 + CmPI595203_11g018730.1 Cmu11g1873 430395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1873 1032 FunFam Glutamate receptor 577 693 - -
Cmu11g1873 1032 SUPERFAMILY Periplasmic binding protein-like II 560 925 - -
Cmu11g1873 1032 Pfam Ligand-gated ion channel 924 955 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu11g1873 1032 Gene3D - 573 691 - -
Cmu11g1873 1032 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 146 1000 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cmu11g1873 1032 Pfam Bacterial extracellular solute-binding proteins, family 3 600 702 IPR001638 -
Cmu11g1873 1032 SMART GluR_14 583 925 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu11g1873 1032 CDD PBP1_GABAb_receptor_plant 147 536 IPR044440 -
Cmu11g1873 1032 Gene3D - 692 820 - -
Cmu11g1873 1032 MobiDBLite consensus disorder prediction 997 1024 - -
Cmu11g1873 1032 FunFam Glutamate receptor 693 823 - -
Cmu11g1873 1032 Gene3D - 889 922 - -
Cmu11g1873 1032 FunFam Glutamate receptor 261 415 - -
Cmu11g1873 1032 FunFam Glutamate receptor 819 927 - -
Cmu11g1873 1032 Pfam Receptor family ligand binding region 164 520 IPR001828 -
Cmu11g1873 1032 MobiDBLite consensus disorder prediction 1 37 - -
Cmu11g1873 1032 Gene3D - 852 888 - -
Cmu11g1873 1032 Gene3D - 164 510 - -
Cmu11g1873 1032 PIRSF IGluLR_plant 114 1031 IPR017103 -
Cmu11g1873 1032 CDD GluR_Plant 580 923 - -
Cmu11g1873 1032 SUPERFAMILY Periplasmic binding protein-like I 142 574 IPR028082 -
Cmu11g1873 1032 Gene3D - 261 535 - -
Cmu11g1873 1032 MobiDBLite consensus disorder prediction 997 1032 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2040 Cmu-Chr1:33453311 Cmu11g1873 Cmu-Chr11:30832073 0.00E+00 dispersed
Cmu02g0873 Cmu-Chr2:10849604 Cmu11g1873 Cmu-Chr11:30832073 2.00E-285 dispersed
Cmu02g0874 Cmu-Chr2:10908883 Cmu11g1873 Cmu-Chr11:30832073 1.60E-280 dispersed
Cmu02g0875 Cmu-Chr2:10990529 Cmu11g1873 Cmu-Chr11:30832073 2.40E-260 dispersed
Cmu08g1404 Cmu-Chr8:26195543 Cmu11g1873 Cmu-Chr11:30832073 1.00E-103 dispersed
Cmu11g1765 Cmu-Chr11:29785517 Cmu11g1873 Cmu-Chr11:30832073 1.10E-104 dispersed
Cmu11g1873 Cmu-Chr11:30832073 Cmu02g0338 Cmu-Chr2:3098302 9.50E-276 wgd
Cmu11g1873 Cmu-Chr11:30832073 Cmu08g0914 Cmu-Chr8:21395374 5.30E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1873 K05387 - csv:101204862 1673.29