Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1877 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTTGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCCGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAATCTGTCGTCGATCTTCAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA 705 53.9 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSRSGSSVCVVNIDFKSVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30855088 30855967 + CmPI595203_11g018770.1 Cmu11g1877 430399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1877 234 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cmu11g1877 234 MobiDBLite consensus disorder prediction 160 186 - -
Cmu11g1877 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cmu11g1877 234 CDD RING-H2_EL5-like 102 145 - -
Cmu11g1877 234 Pfam Ring finger domain 102 145 IPR001841 -
Cmu11g1877 234 SUPERFAMILY RING/U-box 84 151 - -
Cmu11g1877 234 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 178 IPR052788 -
Cmu11g1877 234 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2499 Cmu-Chr1:36889980 Cmu11g1877 Cmu-Chr11:30855088 7.80E-18 dispersed
Cmu10g0860 Cmu-Chr10:680502 Cmu11g1877 Cmu-Chr11:30855088 1.30E-42 dispersed
Cmu10g2972 Cmu-Chr10:35931660 Cmu11g1877 Cmu-Chr11:30855088 1.40E-14 dispersed
Cmu11g1877 Cmu-Chr11:30855088 Cmu02g0069 Cmu-Chr2:709451 4.10E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1877 - - - 0.0