Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1877 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTTGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCCGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAATCTGTCGTCGATCTTCAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA 705 53.9 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSRSGSSVCVVNIDFKSVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30855088 30855967 + CmPI595203_11g018770.1 Cmu11g1877 430399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1877 234 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cmu11g1877 234 MobiDBLite consensus disorder prediction 160 186 - -
Cmu11g1877 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cmu11g1877 234 CDD RING-H2_EL5-like 102 145 - -
Cmu11g1877 234 Pfam Ring finger domain 102 145 IPR001841 -
Cmu11g1877 234 SUPERFAMILY RING/U-box 84 151 - -
Cmu11g1877 234 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 178 IPR052788 -
Cmu11g1877 234 SMART ring_2 103 144 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1877 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2499 Cmu-Chr1:36889980 Cmu11g1877 Cmu-Chr11:30855088 7.80E-18 dispersed
Cmu10g0860 Cmu-Chr10:680502 Cmu11g1877 Cmu-Chr11:30855088 1.30E-42 dispersed
Cmu10g2972 Cmu-Chr10:35931660 Cmu11g1877 Cmu-Chr11:30855088 1.40E-14 dispersed
Cmu11g1877 Cmu-Chr11:30855088 Cmu02g0069 Cmu-Chr2:709451 4.10E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0421 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.8e-225 777.3
Cmu11g0809 . 25 438 C3H Transcription Factor Family AT2G31510 54.3 3.7e-108 389.0
Cmu08g0421 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 2.4e-169 592.4
Cmu08g0421 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 3.6e-167 585.1
Cmu01g1462 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cmu01g1462 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.4e-47 186.4
Cmu11g0502 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.1e-76 281.2
Cmu06g1122 . 177 481 C3H Transcription Factor Family AT1G11020 75.3 5.1e-135 477.6
Cmu07g1448 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cmu04g0277 . 93 453 C3H Transcription Factor Family AT5G08750 61.0 4.8e-121 431.4
Cmu10g1708 . 26 456 C3H Transcription Factor Family AT3G16090 71.3 5.0e-166 581.3
Cmu11g0502 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.5e-73 271.9
Cmu08g1475 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cmu01g1572 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.0e-69 259.2
Cmu01g1849 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 5.7e-159 557.4
Cmu08g1011 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.1e-40 161.8
Cmu06g1554 . 30 418 C3H Transcription Factor Family AT1G18470 76.1 5.8e-179 624.0
Cmu01g0573 . 81 312 C3H Transcription Factor Family AT1G68200 50.2 4.9e-50 195.3
Cmu08g0421 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 2.4e-169 592.4
Cmu08g0421 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 3.6e-167 585.1
Cmu07g0123 . 25 372 C3H Transcription Factor Family AT2G30580 50.9 9.0e-82 300.8
Cmu09g2048 . 102 334 C3H Transcription Factor Family AT5G55970 67.8 4.8e-93 338.2
Cmu04g0277 . 93 453 C3H Transcription Factor Family AT5G63780 57.2 7.9e-116 414.1
Cmu10g2495 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 9.8e-105 377.5
Cmu09g2048 . 515 812 C3H Transcription Factor Family AT4G26580 62.0 1.6e-110 396.4
Cmu04g0666 . 51 515 C3H Transcription Factor Family AT5G01960 68.5 2.3e-167 585.5
Cmu07g0585 . 1 482 C3H Transcription Factor Family AT5G01960 58.2 8.8e-151 530.4
Cmu02g1084 . 1 152 C3H Transcription Factor Family AT2G04240 60.1 1.0e-43 173.3
Cmu02g2268 . 1 242 C3H Transcription Factor Family AT5G19430 52.8 1.2e-62 236.9
Cmu07g1101 . 130 585 C3H Transcription Factor Family AT5G45290 52.9 4.7e-104 375.6
Cmu02g2268 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 1.2e-57 220.3
Cmu06g1453 . 124 416 C3H Transcription Factor Family AT5G05810 52.8 3.7e-74 275.8
Cmu11g0649 . 53 205 C3H Transcription Factor Family AT5G05830 58.2 2.0e-44 176.0
Cmu11g0502 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 4.8e-74 274.6
Cmu11g0682 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 5.0e-115 411.0
Cmu09g0639 . 27 339 C3H Transcription Factor Family AT1G63900 65.9 7.6e-111 397.1
Cmu05g0298 . 10 392 C3H Transcription Factor Family AT2G44580 53.7 3.3e-120 428.7
Cmu08g1475 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.2e-41 163.3
Cmu05g1635 . 3 314 C3H Transcription Factor Family AT5G20910 63.5 8.5e-111 397.1
Cmu10g1708 . 144 444 C3H Transcription Factor Family AT1G65040 68.0 1.5e-107 386.3
Cmu01g1572 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 1.0e-73 273.5
Cmu08g1475 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 7.0e-70 260.8
Cmu10g2374 . 1 317 C3H Transcription Factor Family AT3G10810 53.6 2.3e-81 300.1
Cmu01g0237 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.0e-45 179.1
Cmu01g0631 . 18 327 C3H Transcription Factor Family AT1G68070 63.1 5.0e-104 374.8
Cmu05g0199 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.0e-88 323.9
Cmu10g1184 . 47 368 C3H Transcription Factor Family AT1G68070 50.2 3.1e-82 302.4
Cmu11g1877 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.7e-51 198.7
Cmu10g0860 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cmu08g1226 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 1.0e-111 400.6
Cmu10g0860 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.2e-39 157.9
Cmu08g0421 . 77 566 C3H Transcription Factor Family AT2G31510 75.1 4.8e-225 777.3
Cmu11g0809 . 25 438 C3H Transcription Factor Family AT2G31510 54.3 3.7e-108 389.0
Cmu01g1462 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.0e-54 210.3
Cmu10g2549 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.0e-41 164.9
Cmu04g0175 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 4.8e-151 530.8
Cmu05g1005 . 633 890 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cmu05g1004 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 9.8e-128 453.4
Cmu02g2360 . 41 337 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Cmu01g0741 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.2e-125 446.4
Cmu06g0127 . 43 301 C3H Transcription Factor Family AT2G41980 74.9 9.5e-123 436.8
Cmu05g2722 . 168 418 C3H Transcription Factor Family AT2G41980 79.3 6.2e-122 434.1
Cmu05g0598 . 119 392 C3H Transcription Factor Family AT3G06140 63.3 4.4e-95 345.1
Cmu10g2756 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.4e-85 313.5
Cmu06g1744 . 58 368 C3H Transcription Factor Family AT3G47990 69.7 1.7e-127 452.6
Cmu01g1265 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 1.1e-120 429.9
Cmu11g1877 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 1.1e-50 196.8
Cmu10g0860 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cmu09g1710 . 37 405 C3H Transcription Factor Family AT3G18930 54.4 3.1e-84 309.3
Cmu10g0894 . 20 235 C3H Transcription Factor Family AT5G66070 75.0 3.1e-75 278.5
Cmu10g2792 . 3 273 C3H Transcription Factor Family AT5G02750 53.4 6.2e-68 254.6
Cmu06g1554 . 34 489 C3H Transcription Factor Family AT1G73950 72.4 2.3e-194 675.2
Cmu08g0166 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.3e-39 157.9
Cmu01g0631 . 15 251 C3H Transcription Factor Family AT2G01735 60.8 5.2e-74 274.6
Cmu10g1184 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.3e-52 201.8