Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1886 ATGTCGGGATCTGAGACCGGAGTGATTTCCAGCGGCGAACCCTTCACCATCGGTCTCCACAAGAATTCAGTACAGTCACAACAGCCGGTCATGCAGGGCATGCATTTACCCTTCGGCGTCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGGCGTCGGAGTTGCCGGTAATGCTGGTGCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATGGCAATGGCTCCTGCAGTCCGCTCTCCCGCCGCAACTCAGTCCAGTGGAGGTTTTTGTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCACTCAAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTTCTAGCAAAAAGCAGCAGTTGGATGGCTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTACGAGGGGCGATTCGAGATTTTGTCGCTATCTGGGTCCTATCTCCTCTCTGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGTCCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTACAGGTGGTCGTGGGGAGCTTCGTCACTGATGGGGTGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGTCCCCTGTTACTGCACCCCATAAACTTGCTCCAATCCGTGCTGGAATGACGGGAGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCCGGGAGTCCGTTTAATCAGAGTGCTATAGCCTGCAATAATAACACCATATGTTGGAATTTGGGATGGCTTGGAACCTTGGCCTTGTGCCCGCTGGAAACGAAAGACAGACAGACGACACAGATGGTTTCAGTTAGGAATTAG 1137 53.21 MSGSETGVISSGEPFTIGLHKNSVQSQQPVMQGMHLPFGVDGVYKPVAAASPTYQSSGVGVAGNAGADGSAREAFVNMNSQSEPVKRKRGRPRKYGPDGSMAMAPAVRSPAATQSSGGFCPPPTAAPPSGGSATQTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGVHKELRQVNQIEQSPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAIACNNNTICWNLGWLGTLALCPLETKDRQTTQMVSVRN 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30893192 30896043 - CmPI595203_11g018860.1 Cmu11g1886 430408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1886 378 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Cmu11g1886 378 FunFam AT-hook motif nuclear-localized protein 1-like 167 298 - -
Cmu11g1886 378 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Cmu11g1886 378 CDD DUF296 166 280 IPR005175 -
Cmu11g1886 378 MobiDBLite consensus disorder prediction 310 333 - -
Cmu11g1886 378 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 335 IPR039605 GO:0003680(InterPro)
Cmu11g1886 378 MobiDBLite consensus disorder prediction 317 333 - -
Cmu11g1886 378 MobiDBLite consensus disorder prediction 77 165 - -
Cmu11g1886 378 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 289 - -
Cmu11g1886 378 SMART AT_hook_2 139 151 IPR017956 GO:0003677(InterPro)
Cmu11g1886 378 SMART AT_hook_2 86 98 IPR017956 GO:0003677(InterPro)
Cmu11g1886 378 MobiDBLite consensus disorder prediction 129 160 - -
Cmu11g1886 378 Gene3D - 167 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0870 Cmu-Chr8:20983940 Cmu11g1886 Cmu-Chr11:30893192 2.00E-92 dispersed
Cmu10g1021 Cmu-Chr10:2167894 Cmu11g1886 Cmu-Chr11:30893192 1.20E-46 dispersed
Cmu11g0043 Cmu-Chr11:906003 Cmu11g1886 Cmu-Chr11:30893192 1.50E-49 dispersed
Cmu11g1886 Cmu-Chr11:30893192 Cmu06g0374 Cmu-Chr6:4281642 2.20E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1886 - - - 0.0