Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1890 ATGGCGACGATGGCGATGAAGGGCAAAGTTTGTGTTACAGGGGCTGGAGGGTTTATTGGTTCGTGGGTCGTCAAGCTTCTGCTATCCAGGGATTATATTGTTCACGGAACTGTCAGGGAGCCTAGCGATGCTAAGTATGATCACTTGAGAAAACTTGAGAAAGCGACCGAAAATTTGGAACTGTTTAAAGCTGATTTGCTGAACTATGAGTCTCTGCGTTCAGCGATTGCAGGATGTGATGGAGTTTTCCATGTTGCCTGTCCAGTTCCTTCAACAACTTCATCAAACCCCGAGACAGAAGTGATTGAACCTGCTGTAAAGGGCACACATAATGTGCTTGAAGCTTGTGTCGAAGCAAAAATTAAGCGAGTAGTTGTAGTATCCTCAGCCGCTGCAGTGTTTTTCAATCCCAGTTGGCCTCAAGGTCGAGTAATGGATGAAAGTTGTTGGTCCGATATGGAGCACTGCAGAGCTACTAAGAACTGGTATTTTCTGGCAAAAACAAAAGCTGAAAGTGAAGCCTTGGAGTTTGGGAGAAGATGTGGGCTCGACGTTGTGACTATGTGTCCTACTCTCGTTATCGGGCCGGTTTTGCAGGCAACAGTCAACGCCAGCAGCTTGGTCCTTCTCAAAATTCTAAAAGAAGGATGTGAGTCGATGGAAAACAGGCTACGGATGTTAGTAGACGTACGAGATGTAGCAGAGGCGCTAGTTCTTTTATATGAGAAGGGGGAGGCAGAAGGAAGGTATATCTGTACCGCGCATACAATTGAGACAAGGGAGCTGGTGGATGCATTGAAGAGGAAGTACCCTGATTATAGCTATCCAAAGAAGTTGATTGAAGGGAAGGCGGAGTCGGTAAGTCTGAGCTCGGAGAAGCTGCAAAGATTGGGTTGGAAGTATCGGGCGTTAGAGGACACGCTTGTGGATGCTGTCCAGAGTTTCAAAGATGCCGGCATGTTGGAGTGA 969 46.96 MATMAMKGKVCVTGAGGFIGSWVVKLLLSRDYIVHGTVREPSDAKYDHLRKLEKATENLELFKADLLNYESLRSAIAGCDGVFHVACPVPSTTSSNPETEVIEPAVKGTHNVLEACVEAKIKRVVVVSSAAAVFFNPSWPQGRVMDESCWSDMEHCRATKNWYFLAKTKAESEALEFGRRCGLDVVTMCPTLVIGPVLQATVNASSLVLLKILKEGCESMENRLRMLVDVRDVAEALVLLYEKGEAEGRYICTAHTIETRELVDALKRKYPDYSYPKKLIEGKAESVSLSSEKLQRLGWKYRALEDTLVDAVQSFKDAGMLE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30921141 30924016 + CmPI595203_11g018900.1 Cmu11g1890 430412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1890 322 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 313 IPR050425 GO:0016616(PANTHER)
Cmu11g1890 322 Coils Coil 52 72 - -
Cmu11g1890 322 FunFam NAD(P)-binding Rossmann-fold superfamily protein 3 322 - -
Cmu11g1890 322 Gene3D - 2 322 - -
Cmu11g1890 322 Pfam NAD dependent epimerase/dehydratase family 10 246 IPR001509 -
Cmu11g1890 322 CDD FR_SDR_e 10 299 - -
Cmu11g1890 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 316 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0041 Cmu-Chr6:408636 Cmu11g1890 Cmu-Chr11:30921141 3.70E-48 dispersed
Cmu10g2064 Cmu-Chr10:26503770 Cmu11g1890 Cmu-Chr11:30921141 1.80E-71 dispersed
Cmu10g2065 Cmu-Chr10:26516711 Cmu11g1890 Cmu-Chr11:30921141 6.40E-69 dispersed
Cmu02g1060 Cmu-Chr2:20486253 Cmu11g1890 Cmu-Chr11:30921141 4.70E-59 transposed
Cmu03g0658 Cmu-Chr3:768605 Cmu11g1890 Cmu-Chr11:30921141 6.00E-51 transposed
Cmu09g0315 Cmu-Chr9:2993924 Cmu11g1890 Cmu-Chr11:30921141 2.80E-75 transposed
Cmu10g1567 Cmu-Chr10:11584086 Cmu11g1890 Cmu-Chr11:30921141 1.70E-61 transposed
Cmu11g1890 Cmu-Chr11:30921141 Cmu08g0920 Cmu-Chr8:21480182 1.10E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1890 - - - 0.0