Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1893 ATGGAGGAGGATCTCCATTTCTCCGAATACGACTTAATAGGGCAGATTGATTGGAACGACTTCTTTGATGAATTCCCGGAGGTGGAGCTCCCTCTTGCCGGGGATTCAACATCGCCCCACGGATCTCCTGATTCCTTTTCTTCCTGGATCAACCACCTGGAAAACGCTTTATTGAATGACGATCAAGACAAGGGGGTTTCCCTTCCCACTCCTACCGATGATTGCTGCGATAGTTTTTTGGCTGACGTCCTCGTCGACACTCATGGAGGAGCCTCTGTAATCGACCTCGATTCCAATGCTTCCGATTGCGGTAACCAGTTTAGCAGTTCCCAGAAGGAGGATGGACATAAGGTTTCTCCCGCGCCTACTGACGATTCCTGTGGTAGTTTTATGGCTGAAGTACTTGTAGATACTCACGGGAGCTCCTCTGGGGTTGATGCTGTAGTTGACGTTCTGTCCAACGCTTCCGATTGCGGTGACGACTCGAACAATTCCCAGAAGGAGAAGATCGACGCAACAAACATCGACGATAGTGTAGGTGAAGATGTCGATGATTCGCTTTCTAAAAAGCGGAGAAGGCAGCTGAGAAATAGGGATGCCGCAGTAAGATCTAGGGAGAGGAAAAAGATGTACGTAAAGGATCTAGAGATGAAGAGTAAATTTCTTGAAGGTGAATGCCGGAGATTGGGGCGTTTGCTCCAGTGTTACTGTGCTGAGAATCAAGCCTTACGGTTTAGTCTACAGATGGGAGGTGCTTCTGGTGCTTCACTGACCAAGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTAGTGGGCACCGTTTGCCTGTTCACCCTTCCTCAACTCCCACAATCAACTCTGGAACCTGTTCCAAGAGTAACAATGGAGGACGAAGGTCCAGGAAGCGCGCCTCTCAACGAGAATGAAAATAAGGACTCCAGATACTCATACACATCGTTACAAACTAGGAGGTGCAAAGCGGCGAGAACAAGGATGAAACCAAGTATGTTGGATGCGATGCTCGGTCCTAGTTTGGCTCTGATTTCGATAGGCTTGGAATTATTATCTAAAGACAAACAAATGCGGAGAATGGATTGGATGTCGTATGTCTTCGGTGCTGAGTTTATGTTATCGGAAACCACGGTTGTAAGGAACTGCTGCAGCCGATCTTATCCTTTTTAA 1206 48.01 MEEDLHFSEYDLIGQIDWNDFFDEFPEVELPLAGDSTSPHGSPDSFSSWINHLENALLNDDQDKGVSLPTPTDDCCDSFLADVLVDTHGGASVIDLDSNASDCGNQFSSSQKEDGHKVSPAPTDDSCGSFMAEVLVDTHGSSSGVDAVVDVLSNASDCGDDSNNSQKEKIDATNIDDSVGEDVDDSLSKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRLLQCYCAENQALRFSLQMGGASGASLTKQESAVLLLESLLLGSLLWLVGTVCLFTLPQLPQSTLEPVPRVTMEDEGPGSAPLNENENKDSRYSYTSLQTRRCKAARTRMKPSMLDAMLGPSLALISIGLELLSKDKQMRRMDWMSYVFGAEFMLSETTVVRNCCSRSYPF 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30939024 30942639 - CmPI595203_11g018930.1 Cmu11g1893 430415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1893 401 SMART brlzneu 184 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1893 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1893 401 CDD bZIP_HY5-like 190 241 - -
Cmu11g1893 401 MobiDBLite consensus disorder prediction 162 192 - -
Cmu11g1893 401 MobiDBLite consensus disorder prediction 104 124 - -
Cmu11g1893 401 MobiDBLite consensus disorder prediction 157 202 - -
Cmu11g1893 401 Gene3D - 188 248 - -
Cmu11g1893 401 Pfam bZIP transcription factor 188 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1893 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g1893 401 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 9 294 - -
Cmu11g1893 401 MobiDBLite consensus disorder prediction 298 319 - -
Cmu11g1893 401 SUPERFAMILY Leucine zipper domain 189 245 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1893 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g32 Blo01g01654 Blo12g00839 . . Bpe02g00289 . Bma04g00305 Bma01g02425 . . . Cma09g00015 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02428 Csa04g02744 . . . . . . . . . . . . Cmo09g00014 . . . Car09g00014 . . . . . . . . . Cla11g01858 Cam11g1925 Cec11g1952 Cco11g1964 Clacu11g2090 Cmu11g1893 Cre11g2301 . . Chy07g00432 Cme07g00018
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7207 PF00170 bZIP_1 4.20E-09 CL0018 Cmu TF