Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1896 ATGCGTTTTCGCTCAGTGATCACTCCATTATCAGGGATGGCAATGGCGCTAGTTCAGCCACACACTTCAGCTTCTGCAATTTCGTCTTCCTCCGCCTCATTCTACAGAAGTTCTTTTCAGCAACTCCGTTCGCGGACCACGACCCTTGATCTTCGGAACAGCCACTCCATCCCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAAGCCATCGCCAATAGTCCACTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAAGCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGCTCATGGTATGGAGAAGGGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAAATGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTTGGAGCTTTAGTTCCAGAAATCTTAGATATTTTTGGAGCTTTTCATTTTACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATTGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGACCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTGAAGGCATAGGGCAGGATGCAATTTTTAGGGTGCTGGACCTTCTGGTGAACGTGAGGCGAGCCTATTCGAGAATGATTTGTTGGGTTGCAATGGAGCCAGGTGTAGGTCTACTGTTCTCAAGATCTGCATCTGCGAATCTCCCACATTCATGTCTCCTACTCGATGATCTTCTCTACTCGATCTGCCAAATTCAACTCACTCCTCCACTTCTGCTTCAGGTAACTCTCTCTCCTTCAG 1207 46.64 MRFRSVITPLSGMAMALVQPHTSASAISSSSASFYRSSFQQLRSRTTTLDLRNSHSIPHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQLEKKKKAAVANSSKFKALAEEARKDSSWYGEGRPRWLGPLPYDYPKYLTGEMPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGEGIGQDAIFRVLDLLVNVRRAYSRMICWVAMEPGVGLLFSRSASANLPHSCLLLDDLLYSICQIQLTPPLLLQVTLSPS 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30955298 30969629 + CmPI595203_11g018960.1 Cmu11g1896 430418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1896 402 Gene3D Chlorophyll a/b binding protein domain 134 336 - -
Cmu11g1896 402 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 82 334 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cmu11g1896 402 SUPERFAMILY Chlorophyll a-b binding protein 126 331 - -
Cmu11g1896 402 Pfam Chlorophyll A-B binding protein 144 319 IPR022796 -
Cmu11g1896 402 FunFam Chlorophyll a-b binding protein, chloroplastic 134 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1951 Cmu-Chr10:25095395 Cmu11g1896 Cmu-Chr11:30955298 2.50E-42 dispersed
Cmu11g1374 Cmu-Chr11:25880952 Cmu11g1896 Cmu-Chr11:30955298 3.40E-23 dispersed
Cmu11g1896 Cmu-Chr11:30955298 Cmu02g1834 Cmu-Chr2:32255880 3.30E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1896 K14172 - csv:101209460 571.622