Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1897 ATGAGGATGAGTAGTAGAGGATGGTGGGGCTGTGGAGTCCGTACAAAGGGACCCGCACTGACTGATATTGTAGCTATCAGGAAGAACCAGAATCATGGTGGCCCCACCGCTTCTGTGCCATTATCTGTCTTCTGTACGACGTCGTTTATTGGTGCCCCTACCATTCCCTATTGCCTTAATGGACCTCGCAATTACTACAACTATGGACGTATGAAACAGCTGGCTGGGGCTGGGAGTGTTGGACTTGGAGTACCAATCTCTTTCAAACAGGGATTGGGAAGCTATGAGGAAATACCCAGTTACAATCTCAGATCCAATTCCCAACTCAACCTAATCTCTTCATGCCCGATCTTCATTTCTTCCTTCCCCTCTCTTCTTCTTTTCATTTCCCCCGTCTCCTCACTTAGATTCACTTCTAATTCTCTCTTCACTTTTTTTCTCCCACCTTTCTCCTTCCTATGGATTAACTTTCTTTCACCCCCTTTCCTTTCTCATCCCTTCCCTTCCTCTTCCTCTTCCTCTTCCTCCTCCATGGACGACCTCGGTGCCCAAGTTGTTCCTCCTATTTTCATCCACCAACCCTTGACCAGTCGCTACGCTGATCTGCCTTCCATCCCCAAGAAGCGTGCCTTATCGTATCAGGTCCCCAACTTCCATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCGCAAGATTCCTCACTAAACCCTCCAACCACTCCGATACTCTCTCATCCGAGCTCAAGAGGAAAGTCGATTTCACTGCTGCTACTCCCTCCTCCATCCACAAGAAGACGGTCGACGTTCTGGATGACGAGGATGACAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTTGAGGAGCCAGTGTCTAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGGCGCTGTCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTATCCAATGCCAAAGACTATCACCGGAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCTCTTTCGGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGACTAGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGGCCAGGAAGTAGAGGACCCCCAAGCACTGGGAATTTGGACATCGTCAGTTTATTGACTGTTCTAGCTAGGGCTCAAGGTAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCCGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCTTTGCAGCACCAAAACAAATTAAATGGAAATCCATCTTCTCCTTCCACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCACATCAGCTCCAGATGCTCTTGCAATGCTGTCTCAGAAGAGCAGTGTCAGCAGTGATAGTGAAAAAACAAGGTCATCGTGCCCATCTGGTTCTGATCTCCAGAATAGGCCTATGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCGGATGGACAGGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGTTGTTTGGCTCTTCGCCTGAACATGAAGCCCCACCGAACTTGGCCGCTTCTAGAAAGTACTTCTCTTCTGACAGTAGTAATCCTATTGAAGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAAAAGTTGTTCCCAGTGCAAAGCACAGAAGAAACTACCAGTAATGGGAAAATACCAATCAGAAAAGAAGTTAGTGGCATTGAGGTTCGAAAGCCTCCCAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTCAGATAGAGCCAGACCAAATTCGTTTCGAACTGTTCCGTATCAAGCTGGATACACTTCTTCGGGTTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTCTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCAGTTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGATCTGCATGTTAAATCTTTGATTCATAGGGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTATGCTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAATCTCAGTGTCACCTTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAGGGGAAGGAATTTGAAAAATCCTGGCACCAGGATTCATTGCACGTCTATGGGAGGCTACGTATCTGAAGAAGTAATGGGATTAAGTAGGCAGGGAAAATACGATGAGATACATTCTGGAAGTTTCAAAGTTGGGGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAACAGTTTCCCTGTTATCATAGCTGATGCTACCATCTGTAGGGAATTGAGACATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATATCAGTTCAGAAAGTCATTCATATGTTCCTTCGCAGCCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTTCTCTTACGAGCTAGACAATCCAGATTTTTTAATAAGGCGGTTCAGATTTTTACTCACATTCTCAGCAGAGAGAGACTTCTGTGCGTTGGTGAAAACACTTCTTGACATTTTGACAAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGATTCAGCTCTTAAGCCGGTCAGTGAAAAGGAGGTGCAGGCAGATGGTTGACTTACTTGTTCATTATCACGTATCTGGCTTTGGTGATGCAGAGAAAAAATACCTCTTTCCACCAAATTTGATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCGTCAATGACAGATGCAGATGATTTGGTTGATGCACTAACAAATGACCCGCTGGAGATTGGGTTGGAGTGCTGGAGTTCCCAACTTGATGAAAACGGACAGTCGCCACGGGCTTATGCTTTAATGAGGGGTAATAATTCTTGTAATGAGCTGGTGGAGCGAAAACTTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGAATTAGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGCTGAGCGATGCAGGGTGCAAAGTAGGTCCTGCTCCAGGTGTGCTGTTGTTGCAGCAAAGTGCAACAGGAGGGTTCCTGGGAGTGGTACACACAGATTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCCGTTTGCGTTTGCGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGCTATGGGACAATTTAG 3717 45.74 MRMSSRGWWGCGVRTKGPALTDIVAIRKNQNHGGPTASVPLSVFCTTSFIGAPTIPYCLNGPRNYYNYGRMKQLAGAGSVGLGVPISFKQGLGSYEEIPSYNLRSNSQLNLISSCPIFISSFPSLLLFISPVSSLRFTSNSLFTFFLPPFSFLWINFLSPPFLSHPFPSSSSSSSSSMDDLGAQVVPPIFIHQPLTSRYADLPSIPKKRALSYQVPNFHHQGQLHPHTWNPKAWDWDSARFLTKPSNHSDTLSSELKRKVDFTAATPSSIHKKTVDVLDDEDDSLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPGAVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLATSAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPMELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHEAPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNGKIPIRKEVSGIEVRKPPSSNIPFELFRESDRARPNSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWEQLEENLDLHVKSLIHREELDFWRSGRFLVYAGRQLASHKDGKIRLNKSSKAWSNPELISVSPLAVVGGQKTSFLLRGRNLKNPGTRIHCTSMGGYVSEEVMGLSRQGKYDEIHSGSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDISSESHSYVPSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILTKKCLITDGLSMKSLEMISEIQLLSRSVKRRCRQMVDLLVHYHVSGFGDAEKKYLFPPNLIGPGGITPLHLAASMTDADDLVDALTNDPLEIGLECWSSQLDENGQSPRAYALMRGNNSCNELVERKLGDRKNGQVSVRIRNEIEQLEVSSAERCRVQSRSCSRCAVVAAKCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30975879 30984642 + CmPI595203_11g018970.1 Cmu11g1897 430419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 684 706 - -
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 479 501 - -
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 605 628 - -
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 476 501 - -
Cmu11g1897 1238 Gene3D - 313 383 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 525 550 - -
Cmu11g1897 1238 Pfam SBP domain 322 395 IPR004333 GO:0003677(InterPro)
Cmu11g1897 1238 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 234 1236 IPR044817 GO:0003677(InterPro)
Cmu11g1897 1238 ProSiteProfiles Zinc finger SBP-type profile. 319 396 IPR004333 GO:0003677(InterPro)
Cmu11g1897 1238 FunFam Squamosa promoter-binding-like protein 14 314 383 - -
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 558 575 - -
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 402 418 - -
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 525 578 - -
Cmu11g1897 1238 MobiDBLite consensus disorder prediction 388 418 - -
Cmu11g1897 1238 SUPERFAMILY SBT domain 320 400 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1897 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1953 Cmu-Chr10:25117246 Cmu11g1897 Cmu-Chr11:30975879 8.90E-120 dispersed
Cmu10g2477 Cmu-Chr10:31396089 Cmu11g1897 Cmu-Chr11:30975879 9.10E-30 dispersed
Cmu11g1789 Cmu-Chr11:30001815 Cmu11g1897 Cmu-Chr11:30975879 5.70E-28 dispersed
Cmu11g1897 Cmu-Chr11:30975879 Cmu06g0204 Cmu-Chr6:2159256 7.70E-30 transposed
Cmu11g1897 Cmu-Chr11:30975879 Cmu06g1599 Cmu-Chr6:27206403 7.70E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7208 PF03110 SBP 4.40E-29 No_clan Cmu TF