Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1898 ATGCTCCATCTTCTTCTTCTGCCATTCATTCTTTTAGCATCTTCTTCTGCGGCCGTTAACACCAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCTCCGTTCCCTATCCTTTCGGCATCGGCGTTGGTTGTTACATGGCCACCGGGTTTGACATAACTTGCAATTCTTCGTATGATCCTCCATTACCTTTTCTAGGTACTGGTAACCTTCAAGTTGTGGAAATTTCTCTAACTAATCTCCGCATACGCAACTTTGTTTCTTTCAATTGCTACACCCAAACTGGTGCTCTCGCCCAGAGATCCAGCTCCTGGATCAACTTGGGCCGCCTCCCTATGTTCTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCCTGGCTTTGATCAGTGGCTCCGAGGGGCTCTCCTACACCAGTGGATGCGTCTCCATCTGCTCCAGCAAGGAAAGCGTGATCAATGGCTCTTGTTCTGGCATCGGGTGTTGCCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATGATTGGGAACCTCAACAACCACACCAAAACCTGGCAGTACAATCCTTGCAGTTACGCCTTCCTGGTTGACCAAGATCGCTACAACTTCGAGGTGTCTGATCTGGCGGATCCCAACTTTCTAGCCACCATTCAAAGCTTGCCAGTGGTTTTGGATTGGGTGGCGGGTAACCTGACATGTGAAGAGGCTCGGAAAGGCTTCTCAACCTACGTTTGTCAAGCCAATTCCGAATGCTATGATTCAGAGAGTGGAAGCGGTTATCAATGTGGTTGCAGCCCAGGTTTCAGTGGGAACCCGTATCTCACTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAGCAACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTCATGTCCCCACGGTTCTTATGGTGATGGTCTTGGCTCCACTCTTCTCTTCCTTATCGTCACAGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAATCTCATTAAACTTAGAGAGAAATTCTTCCAACAAAACGGAGGATTCTTATTGCGCCAGCAGTTATCCCAACACCAAGCTGCCTTTGACTCCACAAAAATCTTCACGGCAGAGGAGCTGGAGAAAGCGACCGACAATTATGCTGAGACCCGAATTTTGGGCAAAGGCGGAAACGGGACTGTGTACAAAGGAATTCTGCCAGACGGCAAAATAGTGGCCATTAAGAAGTCCAAGATAGCAGATGAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGGTCCAAATCAACCACAGAAATGTGGTGAAGCTCTTGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTCGTCTACGAATTCGTGTCCAATGGGACTCTACATGCCCATATTCATGACAACAACAGCTTTAATAGTAATTCTCTGTCTTGGGAAAACCGGTTGAGAATAGCGACGGAAACGGCTGCAGCTCTTTCTTACCTGCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTGAAGTCAGCGAACATATTGTTGGACAACAAATGCACTGCAAAAGTAGCCGATTTTGGAGCATCCAAGTTTATCCCAATGGATCAGTCGCAGATCACGACGTTGGTTCAAGGGACGTTTGGTTACTTAGACCCGGAGTATTTCCAAACGAGTCAATTGACGGAGAAGAGCGACGTGTACAGCTTTGGGGTGGTACTGTTAGAGTTGTTGACGGGAGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAGAGAAACCTGTCGTCGTATTTTGTAGCATCGTTGCGTGAGAAGAGGTTGTTTAGGATACTGGAGGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCGGAGCTAGCCAGGAGATGCTTGAAGCTGAAGGGGGAAGACAGGCCCAGAATGAGAGAAGTGGTGTCGGAGTTAGAAAGGTTGAGAAGGGAAGGTGAAGGTGAAGGTGAAGGTGTAAATGAGGAAGAGACACAAACTTTGTTGGAACCACAACAACAACATGCCTTAAACTCACTGGATTTGTACCCCATTTCCACTTCTACTTTTCAAGCCGCCCATGTCTACAATTACGAAGCATTCGTATCCGAGTCTAGTTCTTCCCAATACCAATACGACGTCGGATCCTCCTCCTCCACATCCCATCTCGTCCATTCATTCCACCTCTCGCGATGA 2235 48.95 MLHLLLLPFILLASSSAAVNTKPGCPSNCGNVSVPYPFGIGVGCYMATGFDITCNSSYDPPLPFLGTGNLQVVEISLTNLRIRNFVSFNCYTQTGALAQRSSSWINLGRLPMFFSTTNKFTVIGCDTLALISGSEGLSYTSGCVSICSSKESVINGSCSGIGCCQTAVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDQDRYNFEVSDLADPNFLATIQSLPVVLDWVAGNLTCEEARKGFSTYVCQANSECYDSESGSGYQCGCSPGFSGNPYLTSGCQDIDECAGPSNPCEGICVNTPGSYYCSCPHGSYGDGLGSTLLFLIVTATWLYFTIKKRNLIKLREKFFQQNGGFLLRQQLSQHQAAFDSTKIFTAEELEKATDNYAETRILGKGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILVQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHAHIHDNNSFNSNSLSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDNKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERSESQRNLSSYFVASLREKRLFRILEGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLRREGEGEGEGVNEEETQTLLEPQQQHALNSLDLYPISTSTFQAAHVYNYEAFVSESSSSQYQYDVGSSSSTSHLVHSFHLSR 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30986988 30989440 + CmPI595203_11g018980.1 Cmu11g1898 430420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1898 744 SMART egfca_6 284 322 IPR001881 GO:0005509(InterPro)
Cmu11g1898 744 SUPERFAMILY Protein kinase-like (PK-like) 366 660 IPR011009 -
Cmu11g1898 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1898 744 Gene3D Laminin 235 286 - -
Cmu11g1898 744 SMART egf_5 287 323 IPR000742 -
Cmu11g1898 744 SMART egf_5 236 283 IPR000742 -
Cmu11g1898 744 Pfam Protein kinase domain 387 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1898 744 FunFam Wall-associated receptor kinase 2 357 462 - -
Cmu11g1898 744 Pfam Wall-associated kinase 156 231 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Cmu11g1898 744 ProSiteProfiles Protein kinase domain profile. 387 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1898 744 SUPERFAMILY EGF/Laminin 282 317 - -
Cmu11g1898 744 ProSiteProfiles EGF-like domain profile. 284 317 IPR000742 -
Cmu11g1898 744 SMART serkin_6 387 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1898 744 Gene3D Laminin 287 319 - -
Cmu11g1898 744 FunFam Fibrillin 2 283 322 - -
Cmu11g1898 744 Gene3D Transferase(Phosphotransferase) domain 1 463 685 - -
Cmu11g1898 744 ProSitePatterns Protein kinases ATP-binding region signature. 393 416 IPR017441 GO:0005524(InterPro)
Cmu11g1898 744 FunFam Wall-associated receptor kinase 2 235 282 - -
Cmu11g1898 744 Pfam Wall-associated receptor kinase galacturonan-binding 25 82 IPR025287 GO:0030247(InterPro)
Cmu11g1898 744 CDD EGF_CA 284 317 - -
Cmu11g1898 744 ProSitePatterns Calcium-binding EGF-like domain signature. 284 308 IPR018097 GO:0005509(InterPro)
Cmu11g1898 744 Gene3D Phosphorylase Kinase; domain 1 361 462 - -
Cmu11g1898 744 CDD STKc_IRAK 393 656 - -
Cmu11g1898 744 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Cmu11g1898 744 Pfam Calcium-binding EGF domain 284 314 IPR049883 -
Cmu11g1898 744 FunFam Wall-associated receptor kinase 2 463 681 - -
Cmu11g1898 744 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 677 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1677 Cmu-Chr3:20725726 Cmu11g1898 Cmu-Chr11:30986988 2.00E-90 dispersed
Cmu08g0568 Cmu-Chr8:17844157 Cmu11g1898 Cmu-Chr11:30986988 2.90E-184 dispersed
Cmu08g0569 Cmu-Chr8:17863677 Cmu11g1898 Cmu-Chr11:30986988 1.60E-179 dispersed
Cmu08g0573 Cmu-Chr8:17892168 Cmu11g1898 Cmu-Chr11:30986988 1.50E-51 dispersed
Cmu11g0937 Cmu-Chr11:12850093 Cmu11g1898 Cmu-Chr11:30986988 3.30E-62 dispersed
Cmu11g1898 Cmu-Chr11:30986988 Cmu09g0219 Cmu-Chr9:2273735 6.90E-58 dispersed
Cmu11g0957 Cmu-Chr11:13432391 Cmu11g1898 Cmu-Chr11:30986988 2.00E-117 transposed
Cmu11g0958 Cmu-Chr11:13461373 Cmu11g1898 Cmu-Chr11:30986988 8.80E-51 transposed
Cmu11g1898 Cmu-Chr11:30986988 Cmu08g0944 Cmu-Chr8:21775898 1.10E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75964 PF00069 Pkinase 1.60E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1898 - - - 0.0